RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ALOX5P09917 674 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 S100A1P23297 94 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 MYF6P23409 242 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 CXCR2P25025 360 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ASMTP46597 345 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 BCAP31P51572 246 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 C21orf59P57076 290 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 C21orf58P58505 322 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 MRPS22P82650 360 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 LRRC74AQ0VAA2 488 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 DOC2AQ14183 400 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 NFE2L1Q14494 772 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 KIAA0040Q15053 153 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SPIN4Q56A73 249 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 GPR153Q6NV75 609 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 LAYNQ6UX15 382 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SLC15A3Q8IY34 581 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TBC1D21Q8IYX1 336 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 OR5K2Q8NHB8 316 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 WDR20Q8TBZ3 569 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TFGQ92734 400 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 FOXJ1Q92949 421 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 HBEGFQ99075 208 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 PKP2Q99959 881 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ZDHHC5Q9C0B5 715 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TRIT1Q9H3H1 467 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ACTL8Q9H568 366 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 FARSBQ9NSD9 589 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 OLAHQ9NV23 265 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ATAD3AQ9NVI7 634 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SPATA6Q9NWH7 488 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ACTR3BQ9P1U1 418 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SERGEFQ9UGK8 458 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 PPT2Q9UMR5 302 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ZNF232Q9UNY5 417 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 ZFR2Q9UPR6 939 aaKnown RBP12.22□□□□□ -0.45
SHMT2-229ENST00000557348 SLC17A4Q9Y2C5 497 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 TMEM98Q9Y2Y6 226 aa12.22□□□□□ -0.45
SHMT2-229ENST00000557348 CHD9Q3L8U1 2897 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 A0A1W2PQF6 199 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 FUOMA2VDF0 154 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 E7EQ34 232 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 KPNA4O00629 521 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-229ENST00000557348 TOR1BO14657 336 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 ERN1O75460 977 aaKnown RBP12.21□□□□□ -0.45
SHMT2-229ENST00000557348 OCM2P0CE71 109 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 OCMP0CE72 109 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-229ENST00000557348 ERGP11308 486 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 FCGR1AP12314 374 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 BCKDHAP12694 445 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 HOXB6P17509 224 aaKnown RBP12.21□□□□□ -0.45
SHMT2-229ENST00000557348 AMD1P17707 334 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 PRPS1L1P21108 318 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 TMBIM6P55061 237 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 KIAA1024LP59773 190 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 TAP2Q03519 686 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 ACSM2AQ08AH3 577 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 C16orf72Q14CZ0 275 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 MAPKAPK3Q16644 382 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 C6orf52Q5T4I8 152 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 ACSM2BQ68CK6 577 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 LCN8Q6JVE9 175 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 KIAA1211LQ6NV74 962 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 DOK6Q6PKX4 331 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 SLCO4C1Q6ZQN7 724 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 DCDC5Q6ZRR9 648 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 AMIGO2Q86SJ2 522 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 TRIM69Q86WT6 500 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 PTRH1Q86Y79 214 aaKnown RBP12.21□□□□□ -0.45
SHMT2-229ENST00000557348 LILRA2Q8N149 483 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 KRT78Q8N1N4 520 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 TFAP2CQ92754 450 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 VPS33AQ96AX1 596 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 ISOC1Q96CN7 298 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 HSPBAP1Q96EW2 488 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 TEX37Q96LM6 180 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 BCL7BQ9BQE9 202 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 ALG2Q9H553 416 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 SGK2Q9HBY8 427 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 PCDHA9Q9Y5H5 950 aa12.21□□□□□ -0.45
SHMT2-229ENST00000557348 TBC1D3DA0A087WVF3 549 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3IA0A087WXS9 549 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3EA0A087X179 549 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3KA0A087X1G2 549 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 HTR3EA5X5Y0 456 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3FA6NER0 549 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-229ENST00000557348 LRRC72A6NJI9 287 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3LB9A6J9 549 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 NME4O00746 187 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 ADAM23O75077 832 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 PAK4O96013 591 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-229ENST00000557348 PGRP06401 933 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 INHBBP09529 407 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3HP0C7X1 549 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 C1GALT1C1LP0DN25 315 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 IL12AP29459 219 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 PIK3CBP42338 1070 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 MS4A2Q01362 244 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 SRSF11Q05519 484 aaKnown RBP12.2□□□□□ -0.46
SHMT2-229ENST00000557348 CYP2A13Q16696 494 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms