RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	TUBA3E	Q6PEY2	450 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	TC2N	Q8N9U0	490 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	MDS2	Q8NDY4	140 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	PPHLN1	Q8NEY8	458 aa	Known RBP	11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	SIGLEC12	Q96PQ1	595 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	VN1R1	Q9GZP7	353 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	ENKD1	Q9H0I2	346 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	SYNPO2L	Q9H987	977 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	CHRAC1	Q9NRG0	131 aa		11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689	C19orf25	Q9UFG5	118 aa	Predicted RBP	11.97	□□□□□ -0.49
SHMT2-223	ENST00000556689		A0A0U1RQJ8	604 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	ASPDH	A6ND91	283 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689		H0YIG0	161 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	FANCG	O15287	622 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	CCNDBP1	O95273	360 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	CYC1	P08574	325 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	ERG	P11308	486 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	EZR	P15311	586 aa	Known RBP	11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	ABO	P16442	354 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	RPS3	P23396	243 aa	Known RBP eCLIP	11.96	□□□□□ -0.49	6e-7	■■■□□ 16.5
SHMT2-223	ENST00000556689	HSD17B2	P37059	387 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	CSNK1G2	P78368	415 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	KLF1	Q13351	362 aa	Predicted RBP	11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	OR1C1	Q15619	314 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	MINDY4	Q4G0A6	757 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	PCID2	Q5JVF3	399 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	MFSD4B	Q5TF39	518 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZNF425	Q6IV72	752 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	MEX3B	Q6ZN04	569 aa	Known RBP	11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	DOLPP1	Q86YN1	238 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	HORMAD2	Q8N7B1	307 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	UBL4B	Q8N7F7	174 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	TMEM178A	Q8NBL3	297 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	FAM98A	Q8NCA5	519 aa	Known RBP	11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	M1AP	Q8TC57	530 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	AGAP11	Q8TF27	550 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	CA5BP1	Q8WTZ4	195 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	SCMH1	Q96GD3	660 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	BAG1	Q99933	345 aa	Predicted RBP	11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	HES7	Q9BYE0	225 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	ANKRD10	Q9NXR5	420 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	PCYOX1	Q9UHG3	505 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	TSR3	Q9UJK0	312 aa	Known RBP	11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	AMFR	Q9UKV5	643 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	NEU2	Q9Y3R4	380 aa		11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	EPN1	Q9Y6I3	576 aa	Predicted RBP	11.96	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZNF839	A8K0R7	811 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	BTNL10	A8MVZ5	291 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689		E9PLN8	166 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	MYO1C	O00159	1063 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	PRRG2	O14669	202 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	SP1	P08047	785 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	CD1E	P15812	388 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	FMO4	P31512	558 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	AGTR2	P50052	363 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	PNLIPRP1	P54315	467 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	EIF3B	P55884	814 aa	Known RBP	11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	OC90	Q02509	493 aa	Predicted RBP	11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	ACTN3	Q08043	901 aa	Predicted RBP	11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	EXT1	Q16394	746 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	ICE2	Q659A1	982 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	LANCL3	Q6ZV70	420 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	CRLF3	Q8IUI8	442 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	EID3	Q8N140	333 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	GHDC	Q8N2G8	530 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	MPP5	Q8N3R9	675 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	LRRC57	Q8N9N7	239 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	ACBD4	Q8NC06	268 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	OR9A4	Q8NGU2	314 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	OR51Q1	Q8NH59	317 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	MCOLN3	Q8TDD5	553 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	PHF10	Q8WUB8	498 aa	Known RBP	11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	SDCCAG3	Q96C92	435 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	FRMD6	Q96NE9	622 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	EBNA1BP2	Q99848	306 aa	Known RBP	11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	VKORC1	Q9BQB6	163 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	RAB6B	Q9NRW1	208 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	FAM114A2	Q9NRY5	505 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	COQ3	Q9NZJ6	369 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	TAC3	Q9UHF0	121 aa		11.95	□□□□□ -0.5
SHMT2-223	ENST00000556689	CCDC168	Q8NDH2	2452 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	TCRBV7S2A1N4T	A0A589	114 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	GRID2IP	A4D2P6	1211 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	ARHGEF33	A8MVX0	844 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689		H3BMM5	538 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	PSIP1	O75475	530 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	TSPAN12	O95859	305 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	IFNB1	P01574	187 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	APRT	P07741	180 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	CHRM3	P20309	590 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	ATP5D	P30049	168 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	ST13	P50502	369 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	ABAT	P80404	500 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	PTK6	Q13882	451 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	GBX1	Q14549	363 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	CTSL3P	Q5NE16	218 aa		11.94	□□□□□ -0.5
SHMT2-223	ENST00000556689	SLC25A25	Q6KCM7	469 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms