RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 FJX1Q86VR8 437 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 FAM217AQ8IXS0 508 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 DEFB107AQ8IZN7 70 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 KRT78Q8N1N4 520 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 GALNT4Q8N4A0 578 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 EFCAB3Q8N7B9 438 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 OR4K2Q8NGD2 314 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 L3HYPDHQ96EM0 354 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 SLC30A3Q99726 388 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 AARSD1Q9BTE6 412 aaKnown RBP4.95□□□□□ -1.62
TMEM260-210ENST00000556422 ZBTB26Q9HCK0 441 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 ATP13A2Q9NQ11 1180 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 PPM1HQ9ULR3 514 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 COPG1Q9Y678 874 aaKnown RBP4.95□□□□□ -1.62
TMEM260-210ENST00000556422 ALPK3Q96L96 1907 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 FAM172BPA6NC97 362 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 A8MU76 341 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 ANKRD66B4E2M5 251 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 H0YAE9 185 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 H0YIV9 168 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TXNDC9O14530 226 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TERTO14746 1132 aaKnown RBP4.95□□□□□ -1.62
TMEM260-210ENST00000556422 LILRB5O75023 590 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TNFRSF21O75509 655 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 BCAS2O75934 225 aaPredicted RBP4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TSPAN12O95859 305 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 MT-CO1P00395 513 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CSTAP01040 98 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 LCKP06239 509 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 IGFBP1P08833 259 aaPredicted RBP4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TSPAN8P19075 237 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 GPC1P35052 558 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 SMAD3P84022 425 aaKnown RBP4.95□□□□□ -1.62
TMEM260-210ENST00000556422 XIAPP98170 497 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 SLC34A1Q06495 639 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CCNIQ14094 377 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TAF1AQ15573 450 aaPredicted RBP4.95□□□□□ -1.62
TMEM260-210ENST00000556422 UGT3A2Q3SY77 523 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 AKIRIN2Q53H80 203 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 PITRM1Q5JRX3 1037 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TXNDC8Q6A555 127 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 PSRC1Q6PGN9 363 aaPredicted RBP4.95□□□□□ -1.62
TMEM260-210ENST00000556422 IGF2-ASQ6U949 168 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 MSANTD1Q6ZTZ1 278 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 LHFPL2Q6ZUX7 228 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CHSY3Q70JA7 882 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 GAREM2Q75VX8 874 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 GLT6D1Q7Z4J2 308 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CUZD1Q86UP6 607 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 HPS6Q86YV9 775 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CENPSQ8N2Z9 138 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 FAM109AQ8N4B1 249 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 GRPEL2Q8TAA5 225 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 ZNF671Q8TAW3 534 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 ING5Q8WYH8 240 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 STMN2Q93045 179 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TSPAN17Q96FV3 270 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TMEM169Q96HH4 297 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 ZNF333Q96JL9 665 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 DACH2Q96NX9 599 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TXN2Q99757 166 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 FEM1AQ9BSK4 669 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 RTKNQ9BST9 563 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 MEAF6Q9HAF1 191 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CMTM6Q9NX76 183 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CD300AQ9UGN4 299 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 TINAGQ9UJW2 476 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 APPL1Q9UKG1 709 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CLEC4EQ9ULY5 219 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 CDYLQ9Y232 598 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 RAI2Q9Y5P3 530 aa4.95□□□□□ -1.62
TMEM260-210ENST00000556422 C12orf71A8MTZ7 269 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 SLCO1B7G3V0H7 640 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 KPNA4O00629 521 aaPredicted RBP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 SGCEO43556 437 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 VPS4BO75351 444 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 RBBP9O75884 186 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 APOL3O95236 402 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 SIX3O95343 332 aaPredicted RBP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 LYNP07948 512 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 RBP1P09455 135 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 CLEC2LP0C7M8 214 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 ZNF888P0CJ79 500 aaPredicted RBP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 IMPDH1P20839 514 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 CD40LGP29965 261 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 CA5AP35218 305 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 NUDT1P36639 197 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 STAT5AP42229 794 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 KPNA2P52292 529 aaKnown RBP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 WDR5P61964 334 aaKnown RBP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 RPS26P62854 115 aaKnown RBP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 SLC3A1Q07837 685 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 TOP3AQ13472 1001 aaPredicted RBP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 ALKBH1Q13686 389 aaKnown RBP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 ARHGAP19Q14CB8 494 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.94□□□□□ -1.62
TMEM260-210ENST00000556422 UNC50Q53HI1 259 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 CTSL3PQ5NE16 218 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 MLIPQ5VWP3 458 aa4.94□□□□□ -1.62
TMEM260-210ENST00000556422 CLEC6AQ6EIG7 209 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms