RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CSNK2BP67870 215 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 NFATC2Q13469 925 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 CAMK2GQ13555 558 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-212ENST00000552491 UGT8Q16880 541 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 TIGD6Q17RP2 521 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 TPRG1LQ5T0D9 272 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 RGMBQ6NW40 437 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 METTL2BQ6P1Q9 378 aaKnown RBP5.25□□□□□ -1.57
LIMA1-212ENST00000552491 NEK5Q6P3R8 708 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 CBLL1Q75N03 491 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 CCDC80Q76M96 950 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 SLC46A3Q7Z3Q1 461 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 SERPINA11Q86U17 422 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 AKAP14Q86UN6 197 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 HORMAD1Q86X24 394 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 SYTL1Q8IYJ3 562 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 PGBD3Q8N328 593 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 ZBTB2Q8N680 514 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 UBTD2Q8WUN7 234 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 PIH1D2Q8WWB5 315 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 CAPSLQ8WWF8 208 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 ATL1Q8WXF7 558 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 GGHQ92820 318 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 MAL2Q969L2 176 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 TP53INP1Q96A56 240 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 TPD52L3Q96J77 140 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 Q96MT0 163 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 SDHCQ99643 169 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-212ENST00000552491 TTPALQ9BTX7 342 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 TM6SF2Q9BZW4 377 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 NXF2Q9GZY0 626 aaKnown RBP5.25□□□□□ -1.57
LIMA1-212ENST00000552491 TP63Q9H3D4 680 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-212ENST00000552491 MARCH7Q9H992 704 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 NPDC1Q9NQX5 325 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-212ENST00000552491 LATS2Q9NRM7 1088 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 RAD18Q9NS91 495 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 RLIMQ9NVW2 624 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 PSORS1C1Q9UIG5 152 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 IFT52Q9Y366 437 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 TESMINQ9Y4I5 508 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 PLXNB3Q9ULL4 1909 aa5.25□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 LOC100506127A0A0U1RQW1 187 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 A0A1W2PQ67 120 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 FAM47E-STBD1D6RA91 191 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TMEM189-UBE2V1I3L0A0 370 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 GFRA2O00451 464 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 AP3D1O14617 1153 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 FPGTO14772 594 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 KMOO15229 486 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ADAM12O43184 909 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CLDN11O75508 207 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 GCM2O75603 506 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 STC2O76061 302 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 FKBP9O95302 570 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 PTHP01270 115 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 STSP08842 583 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 IRF1P10914 325 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 AKR1A1P14550 325 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 BPIP17213 487 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 GPX2P18283 190 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RPS3P23396 243 aaKnown RBP eCLIP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 DGKAP23743 735 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CTSKP43235 329 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RGS4P49798 205 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ITGA1P56199 1179 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 KCNJ10P78508 379 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 MTAPQ13126 283 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF177Q13360 481 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TP53BP2Q13625 1128 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 MBTPS1Q14703 1052 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CHRNA6Q15825 494 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 NDUFA5Q16718 116 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 GLB1LQ6UWU2 654 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CCBE1Q6UXH8 406 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 CERS6Q6ZMG9 384 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF621Q6ZSS3 439 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RFLNAQ6ZTI6 216 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 EIF3MQ7L2H7 374 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 HEATR4Q86WZ0 1026 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RBFAQ8N0V3 343 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 DNAJC22Q8N4W6 341 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 WFDC5Q8TCV5 224 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 TESCQ96BS2 214 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF486Q96H40 463 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 HRASLS5Q96KN8 279 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 EMILIN2Q9BXX0 1053 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 RNF38Q9H0F5 515 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 REEP1Q9H902 201 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 FBXL12Q9NXK8 326 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 GPR83Q9NYM4 423 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 SPATA7Q9P0W8 599 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 KIF17Q9P2E2 1029 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 AFF4Q9UHB7 1163 aaKnown RBP5.24□□□□□ -1.57
LIMA1-212ENST00000552491 GABRQQ9UN88 632 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 SNX6Q9UNH7 406 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 PCDHGA3Q9Y5H0 932 aa5.24□□□□□ -1.57
LIMA1-212ENST00000552491 A3GALT2U3KPV4 340 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms