RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 CPNE9Q8IYJ1 553 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 TBC1D19Q8N5T2 526 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 CAMKVQ8NCB2 501 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 PPFIBP2Q8ND30 876 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 METTL21AQ8WXB1 218 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 ATL1Q8WXF7 558 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 ANP32BQ92688 251 aaKnown RBP10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 C19orf60Q96EN9 201 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 PRAP1Q96NZ9 151 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 HAUS8Q9BT25 410 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 ZNF160Q9HCG1 818 aa10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 USP9YO00507 2555 aaPredicted RBP10.34□□□□□ -0.75
VTI1BP3-201ENST00000550220 SPTBN1Q01082 2364 aaKnown RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 CNTRLQ7Z7A1 2325 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 LOC102723996A0A087X1L8 192 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 NRP2O60462 931 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 WFS1O76024 890 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 MED26O95402 600 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 NSA2O95478 260 aaKnown RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 AHSGP02765 367 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 ENO2P09104 434 aaPredicted RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 IL10P22301 178 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 TBPL1P62380 186 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 MPP1Q00013 466 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 DHX9Q08211 1270 aaKnown RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 CDC16Q13042 620 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 FRG1Q14331 258 aaKnown RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 NR6A1Q15406 480 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 INAQ16352 499 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 HKDC1Q2TB90 917 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 C4orf17Q53FE4 359 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 PRR30Q53SZ7 412 aaPredicted RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 PIWIL4Q7Z3Z4 852 aaKnown RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 C17orf64Q86WR6 236 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 PRSS58Q8IYP2 241 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 AGGF1Q8N302 714 aaeCLIP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 ST6GALNAC3Q8NDV1 305 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 EEF1AKMT1Q8WVE0 214 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 HAS2Q92819 552 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 CERS2Q96G23 380 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 TUBB6Q9BUF5 446 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 GRPEL1Q9HAV7 217 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 ZBTB20Q9HC78 741 aaPredicted RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 PPANQ9NQ55 473 aaKnown RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 ABCF3Q9NUQ8 709 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 STOX2Q9P2F5 926 aaPredicted RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 RNF14Q9UBS8 474 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 C19orf25Q9UFG5 118 aaPredicted RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 TEKT2Q9UIF3 430 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 MKL2Q9ULH7 1088 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 NOVA2Q9UNW9 492 aaKnown RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 PDE10AQ9Y233 779 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 SLC5A6Q9Y289 635 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 VWA7Q9Y334 891 aa10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 USP9XQ93008 2570 aaPredicted RBP10.33□□□□□ -0.76
VTI1BP3-201ENST00000550220 SPTAN1Q13813 2472 aaKnown RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 IGHV1-45A0A0A0MS14 117 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 A0A0A6YYC8 382 aaPredicted RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 TRAV17A0A0B4J275 112 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 I3L1I5 382 aaPredicted RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 MASP2O00187 686 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 HAT1O14929 419 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 FOXS1O43638 330 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 ALOX12BO75342 701 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 PRR35P0CG20 571 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 C8orf89P0DMQ9 161 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 COX6A1P12074 109 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 EDN3P14138 238 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 PAFAH1B1P43034 410 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 CCR8P51685 355 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 ARG2P78540 354 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 Q0VFX4 171 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 MRPL49Q13405 166 aaKnown RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 PDAP1Q13442 181 aaKnown RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 NAE1Q13564 534 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 HIF1AQ16665 826 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 KCTD19Q17RG1 926 aaPredicted RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 BBS9Q3SYG4 887 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 DUPD1Q68J44 220 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 FAM45BPQ6NSW5 357 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 AGTRAPQ6RW13 159 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 PAQR3Q6TCH7 311 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 TMEM205Q6UW68 189 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 LCTLQ6UWM7 567 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 LAPTM4BQ86VI4 370 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 ARHGEF39Q8N4T4 335 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 AMER3Q8N944 861 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 GPATCH11Q8N954 259 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 FAM45AQ8TCE6 357 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 FAR1Q8WVX9 515 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 SLC13A3Q8WWT9 602 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 ANKRD7Q92527 254 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 CNDP1Q96KN2 507 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 C5orf34Q96MH7 638 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 NDNQ99608 321 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 SGPP1Q9BX95 441 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 RNF32Q9H0A6 362 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 ZNF700Q9H0M5 742 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 DDX47Q9H0S4 455 aaKnown RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 ANKHQ9HCJ1 492 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms