RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TRAF3Q13114 568 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 EIF3IQ13347 325 aaKnown RBP20.3■□□□□ 0.84
VPS29-206ENST00000549578 TUBB3Q13509 450 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 FRMPD2BQ6IN97 320 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 FRMD7Q6ZUT3 714 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 MCATQ8IVS2 390 aaKnown RBP20.3■□□□□ 0.84
VPS29-206ENST00000549578 WDR36Q8NI36 951 aaKnown RBP20.3■□□□□ 0.84
VPS29-206ENST00000549578 WDR34Q96EX3 536 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 PTCD3Q96EY7 689 aaKnown RBP20.3■□□□□ 0.84
VPS29-206ENST00000549578 AIF1LQ9BQI0 150 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 PISDQ9UG56 409 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 TMEM150CB9EJG8 249 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 PLD2O14939 933 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 LCMT2O60294 686 aaKnown RBP20.29■□□□□ 0.84
VPS29-206ENST00000549578 JMJD7P0C870 316 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 NR1D1P20393 614 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 GRK3P35626 688 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 BCL6P41182 706 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 CASP2P42575 452 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 ACY1Q03154 408 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 PCDH1Q08174 1060 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 GPS2Q13227 327 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 CHI3L2Q15782 390 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 TBCCQ15814 346 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 ZC3H12BQ5HYM0 836 aaKnown RBP20.29■□□□□ 0.84
VPS29-206ENST00000549578 FAM219BQ5XKK7 198 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 SREK1Q8WXA9 508 aaKnown RBP20.29■□□□□ 0.84
VPS29-206ENST00000549578 N4BP2L2Q92802 583 aaPredicted RBP20.29■□□□□ 0.84
VPS29-206ENST00000549578 EFCAB11Q9BUY7 163 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 APMAPQ9HDC9 416 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 PLCL2Q9UPR0 1127 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 RNF11Q9Y3C5 154 aa20.29■□□□□ 0.84
VPS29-206ENST00000549578 MDC1Q14676 2089 aaKnown RBP20.29■□□□□ 0.84
VPS29-206ENST00000549578 LOC105369274A0A096LPK9 316 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 LOC102723532A0A0G2JNH3 316 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 TRBC2A0A5B9 178 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 OR1F1O43749 312 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 H2AFYO75367 372 aaKnown RBP20.28■□□□□ 0.84
VPS29-206ENST00000549578 OTCP00480 354 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 MAPK10P53779 464 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 MC2RQ01718 297 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 LCP2Q13094 533 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 E2F2Q14209 437 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 RBBP5Q15291 538 aaKnown RBP20.28■□□□□ 0.84
VPS29-206ENST00000549578 CES4AQ5XG92 561 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 OR4N4Q8N0Y3 316 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 OR4F6Q8NGB9 312 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 PPP1R14CQ8TAE6 165 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 PMEPA1Q969W9 287 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 ZNF501Q96CX3 271 aaPredicted RBP20.28■□□□□ 0.84
VPS29-206ENST00000549578 OR2A5Q96R48 311 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 CTRCQ99895 268 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 NTMT1Q9BV86 223 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 ZNF225Q9UK10 706 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 WASF3Q9UPY6 502 aa20.28■□□□□ 0.84
VPS29-206ENST00000549578 B4E171 279 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 H0YGG7 62 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 UBFD1O14562 309 aaKnown RBP20.27■□□□□ 0.84
VPS29-206ENST00000549578 CLDN9O95484 217 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 MLYCDO95822 493 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 STATHP02808 62 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 MSL3P1P0C860 447 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 NEFHP12036 1026 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 CHN1P15882 459 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 BGNP21810 368 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 TSPAN7P41732 249 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 VSX2P58304 361 aaPredicted RBP20.27■□□□□ 0.84
VPS29-206ENST00000549578 ERVPABLB-1P60509 514 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 ARF3P61204 181 aaPredicted RBP20.27■□□□□ 0.84
VPS29-206ENST00000549578 RPS15AP62244 130 aaKnown RBP20.27■□□□□ 0.84
VPS29-206ENST00000549578 RELAQ04206 551 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 COL9A2Q14055 689 aaPredicted RBP20.27■□□□□ 0.84
VPS29-206ENST00000549578 GRHL2Q6ISB3 625 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 LETMD1Q6P1Q0 360 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 MILR1Q7Z6M3 343 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 SYVN1Q86TM6 617 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 KRT78Q8N1N4 520 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 L3MBTL4Q8NA19 623 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 OR6Y1Q8NGX8 325 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 OR1L3Q8NH93 324 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 RNF31Q96EP0 1072 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 ZNF382Q96SR6 550 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 SCNM1Q9BWG6 230 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 SHCBP1LQ9BZQ2 653 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 FANCEQ9HB96 536 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 SLC39A1Q9NY26 324 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 PCDHGA4Q9Y5G9 962 aa20.27■□□□□ 0.84
VPS29-206ENST00000549578 UGDHO60701 494 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 SPTBP11277 2137 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 CXCR2P25025 360 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 SCTRP47872 440 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 NAA20P61599 178 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 GABREP78334 506 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 CPSF6Q16630 551 aaKnown RBP eCLIP20.27■□□□□ 0.83
VPS29-206ENST00000549578 PAGE2BQ5JRK9 111 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 LIPJQ5W064 366 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 ADNP2Q6IQ32 1131 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 TMIGD1Q6UXZ0 262 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 GPRIN3Q6ZVF9 776 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 ANKRD53Q8N9V6 530 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms