RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ITGA9Q13797 1035 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 MESDQ14696 234 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 SF1Q15637 639 aaKnown RBP4.5□□□□□ -1.69
LIMS1-214ENST00000542845 TAZQ16635 292 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 SYT16Q17RD7 645 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 ATP13A4Q4VNC1 1196 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 ZC3H12BQ5HYM0 836 aaKnown RBP4.5□□□□□ -1.69
LIMS1-214ENST00000542845 EMC4Q5J8M3 183 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 TCTE1Q5JU00 501 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 FRMPD2BQ6IN97 320 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 CYP4V2Q6ZWL3 525 aaPredicted RBP4.5□□□□□ -1.69
LIMS1-214ENST00000542845 GOLGA6L1Q8N7Z2 621 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 MAPK1IP1LQ8NDC0 245 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 DDHD1Q8NEL9 900 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 OR52N2Q8NGI0 321 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 SPATA22Q8NHS9 363 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 LINC01560Q8TB33 94 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 HM13Q8TCT9 377 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 BLOC1S5Q8TDH9 187 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 CHAC2Q8WUX2 184 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 METTL21AQ8WXB1 218 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 MAML1Q92585 1016 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 SLCO2A1Q92959 643 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 MFSD3Q96ES6 412 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 MMABQ96EY8 250 aaPredicted RBP4.5□□□□□ -1.69
LIMS1-214ENST00000542845 PERPQ96FX8 193 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 SCMH1Q96GD3 660 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 AGPAT1Q99943 283 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 YIPF4Q9BSR8 244 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 TUBB6Q9BUF5 446 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 XPO4Q9C0E2 1151 aaKnown RBP4.5□□□□□ -1.69
LIMS1-214ENST00000542845 CDCP1Q9H5V8 836 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 ASB8Q9H765 288 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 MVB12BQ9H7P6 319 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 PLEKHF2Q9H8W4 249 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 PNPLA3Q9NST1 481 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 PARVAQ9NVD7 372 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 Q9UFV3 132 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 RWDD2AQ9UIY3 292 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 ASF1AQ9Y294 204 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 MPDZO75970 2070 aa4.5□□□□□ -1.69
LIMS1-214ENST00000542845 LOC105369274A0A096LPK9 316 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 LOC102723532A0A0G2JNH3 316 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 A0A0J9YVX5 310 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 OR2W5A6NFC9 320 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 TMEM191CA6NGB0 347 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 SLC22A31A6NKX4 558 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 M0R082 166 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CES2O00748 559 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 NDC80O14777 642 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 STX7O15400 261 aaKnown RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 SLC25A12O75746 678 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 ONECUT2O95948 504 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 ANXA5P08758 320 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CD48P09326 243 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 FAM153BP0C7A2 387 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 C8orf89P0DMQ9 161 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 GLI4P10075 376 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 ERVK-10P10266 1014 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 RALBP11234 206 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 ACVR2AP27037 513 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 PEBP1P30086 187 aaKnown RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 HMGCLP35914 325 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 TNNT3P45378 269 aaPredicted RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 MASP1P48740 699 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 EFNA3P52797 238 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CSE1LP55060 971 aaKnown RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 GPR85P60893 370 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 SRSF2Q01130 221 aaKnown RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 ACTN3Q08043 901 aaPredicted RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 GALNT2Q10471 571 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 AP1B1Q10567 949 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 ZBTB17Q13105 803 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 BOP1Q14137 746 aaKnown RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 DPYSL2Q16555 572 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 BBS9Q3SYG4 887 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 MINDY4Q4G0A6 757 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 BOLA3Q53S33 107 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CMPK2Q5EBM0 449 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CATSPEREQ5SY80 951 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 YOD1Q5VVQ6 348 aaPredicted RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 FIGLAQ6QHK4 219 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 B3GNT6Q6ZMB0 384 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 LANCL3Q6ZV70 420 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 GLT6D1Q7Z4J2 308 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CPEB2Q7Z5Q1 589 aaKnown RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 LRRC49Q8IUZ0 686 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 PSTKQ8IV42 348 aaKnown RBP4.49□□□□□ -1.69
LIMS1-214ENST00000542845 OR4N4Q8N0Y3 316 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 LGI4Q8N135 537 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CNTD1Q8N815 330 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CFAP61Q8NHU2 1237 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 FLVCR1-AS1Q8TAF5 88 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 ZNF417Q8TAU3 575 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 FAM222BQ8WU58 562 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 KIAA1191Q96A73 305 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 LRRC46Q96FV0 321 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 CABS1Q96KC9 395 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 IMMP1LQ96LU5 166 aa4.49□□□□□ -1.69
LIMS1-214ENST00000542845 TRIB3Q96RU7 358 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms