RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 SLC22A18Q96BI1 424 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 TRAPPC9Q96Q05 1148 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 ZNF382Q96SR6 550 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 CDC6Q99741 560 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 TRMOQ9BU70 441 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 RAB33BQ9H082 229 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 SYNDIG1Q9H7V2 258 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 ACTR8Q9H981 624 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 SYNPO2LQ9H987 977 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 PELI2Q9HAT8 420 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 GEMIN8Q9NWZ8 242 aaKnown RBP8.97□□□□□ -0.97
DDX55-208ENST00000541259 EPHA6Q9UF33 1036 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 ADAM21Q9UKJ8 722 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 ZNF490Q9ULM2 529 aaPredicted RBP8.97□□□□□ -0.97
DDX55-208ENST00000541259 FIS1Q9Y3D6 152 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 MAP4K5Q9Y4K4 846 aa8.97□□□□□ -0.97
DDX55-208ENST00000541259 KCNE1BA0A087WTH5 132 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 AGRPO00253 132 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 NTN3O00634 580 aaPredicted RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 FFAR3O14843 346 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 HAT1O14929 419 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 AZIN1O14977 448 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 GPR42O15529 346 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 HCRTR1O43613 425 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 LCMT2O60294 686 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 EDF1O60869 148 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 CCNDBP1O95273 360 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 CLDN9O95484 217 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 ESRRBO95718 433 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 CPNE6O95741 557 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 OTCP00480 354 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 C9P02748 559 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 CAPN1P07384 714 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 VIMP08670 466 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 KITP10721 976 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 HGFP14210 728 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 JUPP14923 745 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 CDH3P22223 829 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 LSP1P33241 339 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 SEPHS1P49903 392 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 CCR8P51685 355 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 LIMK1P53667 647 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 SEC24CP53992 1094 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 PKNOX1P55347 436 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 CLDN6P56747 220 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 RAB15P59190 212 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 ABATP80404 500 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 GALNT1Q10472 559 aaPredicted RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 SF3A3Q12874 501 aaKnown RBP eCLIP8.96□□□□□ -0.98
DDX55-208ENST00000541259 E2F2Q14209 437 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 SLBPQ14493 270 aaKnown RBP eCLIP8.96□□□□□ -0.98
DDX55-208ENST00000541259 TRIP6Q15654 476 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 TBCCQ15814 346 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 UGT3A2Q3SY77 523 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 SH2D4BQ5SQS7 431 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 CACHD1Q5VU97 1274 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 LIPJQ5W064 366 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 ADNP2Q6IQ32 1131 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 GRHL2Q6ISB3 625 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 ZNF425Q6IV72 752 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 FBXO42Q6P3S6 717 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 TMEM71Q6P5X7 295 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 WDR74Q6RFH5 385 aaPredicted RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 SCIMPQ6UWF3 145 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 ADCK2Q7Z695 626 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 SLCO6A1Q86UG4 719 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 PAQR7Q86WK9 346 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 PLXDC1Q8IUK5 500 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 RNF175Q8N4F7 328 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 MTFMTQ96DP5 389 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 WDR34Q96EX3 536 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 PTCD3Q96EY7 689 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 THOC1Q96FV9 657 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 ZDHHC12Q96GR4 267 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 FCRL4Q96PJ5 515 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 ZNF317Q96PQ6 595 aaPredicted RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 PLCD4Q9BRC7 762 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 ILKAPQ9H0C8 392 aaPredicted RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 SEMA6CQ9H3T2 930 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 EPB41L1Q9H4G0 881 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 EML4Q9HC35 981 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 FAM60AQ9NP50 221 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 FARSBQ9NSD9 589 aaKnown RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 TMEM184CQ9NVA4 438 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 FGFR1OP2Q9NVK5 253 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 TOR4AQ9NXH8 423 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 MARCOQ9UEW3 520 aaPredicted RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 TRPS1Q9UHF7 1281 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 SNX7Q9UNH6 387 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 RAP2CQ9Y3L5 183 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 TRAF6Q9Y4K3 522 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 MN1Q10571 1320 aaPredicted RBP8.96□□□□□ -0.98
DDX55-208ENST00000541259 SEC16AO15027 2179 aa8.96□□□□□ -0.98
DDX55-208ENST00000541259 CROCCQ5TZA2 2017 aa8.95□□□□□ -0.98
DDX55-208ENST00000541259 IGHV5-10-1A0A0J9YXX1 117 aa8.95□□□□□ -0.98
DDX55-208ENST00000541259 SPAARA0A1B0GVQ0 90 aa8.95□□□□□ -0.98
DDX55-208ENST00000541259 OR2A25A4D2G3 310 aa8.95□□□□□ -0.98
DDX55-208ENST00000541259 TLCD2A6NGC4 264 aa8.95□□□□□ -0.98
DDX55-208ENST00000541259 MATN2O00339 956 aa8.95□□□□□ -0.98
DDX55-208ENST00000541259 MANBAO00462 879 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms