RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CACTIN-AS1Q8N1I8 211 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 MRPL43Q8N983 215 aaKnown RBP16.32■□□□□ 0.2
USP28-208ENST00000540438 EZH1Q92800 747 aaPredicted RBP16.32■□□□□ 0.2
USP28-208ENST00000540438 EPS8L2Q9H6S3 715 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 TPT1P8Q9HAU6 139 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 ERVK-18Q9QC07 812 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 TMCO1Q9UM00 188 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 SAMHD1Q9Y3Z3 626 aaKnown RBP16.32■□□□□ 0.2
USP28-208ENST00000540438 TRBV5-3A0A0A0MS03 114 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 J3KTA2 159 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 KCNK5O95279 499 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 C8GP07360 202 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 NUDT6P53370 316 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 TBPL1P62380 186 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 DPY19L1Q2PZI1 675 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 DCP2Q8IU60 420 aaKnown RBP16.32■□□□□ 0.2
USP28-208ENST00000540438 BTN2A2Q8WVV5 523 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 UCN3Q969E3 161 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 KCNH6Q9H252 994 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 RETREG1Q9H6L5 497 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 RMND5AQ9H871 391 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.32■□□□□ 0.2
USP28-208ENST00000540438 GALNT8Q9NY28 637 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 DOLKQ9UPQ8 538 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 FAM227AF5H4B4 570 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 PPM1DO15297 605 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 PPM1AP35813 382 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 ALDH9A1P49189 494 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 DAPP51397 102 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 SLBPQ14493 270 aaKnown RBP eCLIP16.32■□□□□ 0.2
USP28-208ENST00000540438 ARHGEF6Q15052 776 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 PRSS53Q2L4Q9 553 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 KLHL17Q6TDP4 642 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 LRRC70Q7Z2Q7 622 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 BTLAQ7Z6A9 289 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 JPH3Q8WXH2 748 aaPredicted RBP16.32■□□□□ 0.2
USP28-208ENST00000540438 KCNC2Q96PR1 638 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 DUSP26Q9BV47 211 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 GORASP2Q9H8Y8 452 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 TMEFF2Q9UIK5 374 aaPredicted RBP16.32■□□□□ 0.2
USP28-208ENST00000540438 MOSPD1Q9UJG1 213 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 TCF20Q9UGU0 1960 aaKnown RBP16.32■□□□□ 0.2
USP28-208ENST00000540438 FEZF1A0PJY2 475 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 EPN2O95208 641 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 GNRH1P01148 92 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 KLK1P06870 262 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 JUPP14923 745 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 CRHBPP24387 322 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 IGFBP5P24593 272 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 GPR1P46091 355 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 GZMMP51124 257 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 PPP2R2BQ00005 443 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 GANABQ14697 944 aaKnown RBP16.31■□□□□ 0.2
USP28-208ENST00000540438 C6orf141Q5SZD1 244 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 HENMT1Q5T8I9 393 aaKnown RBP16.31■□□□□ 0.2
USP28-208ENST00000540438 KLHL35Q6PF15 583 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 ELMSAN1Q6PJG2 1045 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 USP51Q70EK9 711 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 GPR149Q86SP6 731 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 CMTM7Q96FZ5 175 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 MAGED4Q96JG8 741 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 CEP295NLQ96MC4 621 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 SELENONQ9NZV5 590 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 SH3GLB1Q9Y371 365 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 PLXNB3Q9ULL4 1909 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 OBSL1O75147 1896 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 IGLV3-16A0A075B6K0 115 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 PRAMEF33A0A0G2JMD5 474 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 FADS2O95864 444 aaKnown RBP16.31■□□□□ 0.2
USP28-208ENST00000540438 C6orf47O95873 294 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 ALPPL2P10696 532 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 RPS6KA3P51812 740 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 RAE1P78406 368 aaKnown RBP16.31■□□□□ 0.2
USP28-208ENST00000540438 XAF1Q6GPH4 301 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 FAM83HQ6ZRV2 1179 aaPredicted RBP16.31■□□□□ 0.2
USP28-208ENST00000540438 HORMAD1Q86X24 394 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 PTOV1Q86YD1 416 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 ERI1Q8IV48 349 aaKnown RBP16.31■□□□□ 0.2
USP28-208ENST00000540438 OR5AR1Q8NGP9 310 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 NELL1Q92832 810 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 TANKQ92844 425 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 REXO5Q96IC2 774 aaKnown RBP16.31■□□□□ 0.2
USP28-208ENST00000540438 ZNF641Q96N77 438 aaPredicted RBP16.31■□□□□ 0.2
USP28-208ENST00000540438 TOX2Q96NM4 488 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 EMILIN2Q9BXX0 1053 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 IGFLR1Q9H665 355 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 KIF17Q9P2E2 1029 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 SLC6A14Q9UN76 642 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 SCN2AQ99250 2005 aa16.31■□□□□ 0.2
USP28-208ENST00000540438 A0A096LPI6 279 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 BCKDKO14874 412 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 CYP17A1P05093 508 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 PLA2G16P53816 162 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ATP1A4Q13733 1029 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 CAMK1Q14012 370 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ADRM1Q16186 407 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 CPTPQ5TA50 214 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ADGRD2Q7Z7M1 963 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 SPARTQ8N0X7 666 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 GLB1L3Q8NCI6 653 aaPredicted RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms