RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TMEM79Q9BSE2 394 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 SLC7A5P2Q9GIP4 190 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 SLC26A1Q9H2B4 701 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 ANKZF1Q9H8Y5 726 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 SNX15Q9NRS6 342 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 TXLNGQ9NUQ3 528 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 PTBP2Q9UKA9 531 aaKnown RBP12.38□□□□□ -0.43
VPS28-216ENST00000533806 RUVBL1Q9Y265 456 aaKnown RBP12.38□□□□□ -0.43
VPS28-216ENST00000533806 SLC22A14Q9Y267 594 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 ACOT9Q9Y305 439 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 TLN1Q9Y490 2541 aaKnown RBP12.38□□□□□ -0.43
VPS28-216ENST00000533806 A0A087X1B8 175 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 CCDC189A1A4V9 331 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 ESPNB1AK53 854 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 ALBP02768 609 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 EIF2S1P05198 315 aaKnown RBP12.37□□□□□ -0.43
VPS28-216ENST00000533806 LTA4HP09960 611 aaKnown RBP12.37□□□□□ -0.43
VPS28-216ENST00000533806 TFEBP19484 476 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 ALAS2P22557 587 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 BCL6P41182 706 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 PMS2P54278 862 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 RPS15AP62244 130 aaKnown RBP12.37□□□□□ -0.43
VPS28-216ENST00000533806 IRF9Q00978 393 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 ERV3-1Q14264 604 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 CATSPEREQ5SY80 951 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 GARNL3Q5VVW2 1013 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 C16orf46Q6P387 395 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 BORAQ6PGQ7 559 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 RAPH1Q70E73 1250 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 TBC1D1Q86TI0 1168 aaPredicted RBP12.37□□□□□ -0.43
VPS28-216ENST00000533806 CSNK1A1LQ8N752 337 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 TTC29Q8NA56 475 aaPredicted RBP12.37□□□□□ -0.43
VPS28-216ENST00000533806 RHEBL1Q8TAI7 183 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 UHMK1Q8TAS1 419 aaKnown RBP12.37□□□□□ -0.43
VPS28-216ENST00000533806 STAG3L4Q8TBR4 150 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 KCTD4Q8WVF5 259 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.37□□□□□ -0.43
VPS28-216ENST00000533806 FKBP10Q96AY3 582 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 ALKBH8Q96BT7 664 aaKnown RBP12.37□□□□□ -0.43
VPS28-216ENST00000533806 NXNL1Q96CM4 212 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 C17orf62Q9BQA9 187 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 SPNS1Q9H2V7 528 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 NMRAL1Q9HBL8 299 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 IRAK4Q9NWZ3 460 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 KCNMB2Q9Y691 235 aa12.37□□□□□ -0.43
VPS28-216ENST00000533806 BSNQ9UPA5 3926 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 FER1L5A0AVI2 2057 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 IGLV3-12A0A075B6K2 115 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 A0A096LPK6 155 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 FEZF1A0PJY2 475 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 PABPN1LA6NDY0 278 aaKnown RBP12.36□□□□□ -0.43
VPS28-216ENST00000533806 VSTM2BA6NLU5 285 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 TXNDC9O14530 226 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 FOXS1O43638 330 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 PRAMEF4O60810 478 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 KLHL2O95198 593 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 CNTFP26441 200 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 TYK2P29597 1187 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 SERPINB8P50452 374 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 SERPINB9P50453 376 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 CCR8P51685 355 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 E2F2Q14209 437 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 SLC29A2Q14542 456 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 UAP1Q16222 522 aaPredicted RBP12.36□□□□□ -0.43
VPS28-216ENST00000533806 MUM1Q2TAK8 710 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 TEX35Q5T0J7 233 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 PRAMEF9Q5VWM5 478 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 SULT1C3Q6IMI6 304 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 PRMT9Q6P2P2 845 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 ADGRD1Q6QNK2 874 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 SLCO4C1Q6ZQN7 724 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 FRA10AC1Q70Z53 315 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 ADCK2Q7Z695 626 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 GSPT2Q8IYD1 628 aaKnown RBP12.36□□□□□ -0.43
VPS28-216ENST00000533806 TCAIMQ8N3R3 496 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 MFSD9Q8NBP5 474 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 ZNF740Q8NDX6 193 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 OR2Y1Q8NGV0 311 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 SLC5A11Q8WWX8 675 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS28-216ENST00000533806 MVB12AQ96EY5 273 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 EGFL8Q99944 293 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 ALG9Q9H6U8 611 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 WDR54Q9H977 334 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 PELI2Q9HAT8 420 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 IFT80Q9P2H3 777 aaPredicted RBP12.36□□□□□ -0.43
VPS28-216ENST00000533806 COPG2Q9UBF2 871 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 FETUBQ9UGM5 382 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 MRPS2Q9Y399 296 aaKnown RBP12.36□□□□□ -0.43
VPS28-216ENST00000533806 KCNE2Q9Y6J6 123 aa12.36□□□□□ -0.43
VPS28-216ENST00000533806 PCM1Q15154 2024 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 HEATR5BQ9P2D3 2071 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 TRBC2A0A5B9 178 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 CDC14CA4D256 554 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 NCF1BA6NI72 391 aaPredicted RBP12.35□□□□□ -0.43
VPS28-216ENST00000533806 NCF1CA8MVU1 366 aaPredicted RBP12.35□□□□□ -0.43
VPS28-216ENST00000533806 C9J4A7 227 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 KLK8O60259 260 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 KERAO60938 352 aa12.35□□□□□ -0.43
VPS28-216ENST00000533806 IPO13O94829 963 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms