RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 FAM180AQ6UWF9 173 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 PIWIL4Q7Z3Z4 852 aaKnown RBP16.92■□□□□ 0.3
PCF11-206ENST00000533018 LMNTD2Q8IXW0 634 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 RASGEF1CQ8N431 466 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 SIRT6Q8N6T7 355 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 AMER3Q8N944 861 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 CD200R1Q8TD46 325 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 FAR1Q8WVX9 515 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 PLA2G3Q9NZ20 509 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 FBXO5Q9UKT4 447 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 MKL2Q9ULH7 1088 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 OSGIN2Q9Y236 505 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 MED16Q9Y2X0 877 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 COMMD10Q9Y6G5 202 aa16.92■□□□□ 0.3
PCF11-206ENST00000533018 GFYI3L273 518 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 PGRMC1O00264 195 aaKnown RBP16.91■□□□□ 0.3
PCF11-206ENST00000533018 P2RX6O15547 441 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 CLDN1O95832 211 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 SERPINA7P05543 415 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 IMPA1P29218 277 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 MAT1AQ00266 395 aaKnown RBP16.91■□□□□ 0.3
PCF11-206ENST00000533018 PPP1R7Q15435 360 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 UGT3A1Q6NUS8 523 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 CYHR1Q6ZMK1 362 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 PALM2Q8IXS6 379 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.91■□□□□ 0.3
PCF11-206ENST00000533018 GRK7Q8WTQ7 553 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 ALKBH8Q96BT7 664 aaKnown RBP16.91■□□□□ 0.3
PCF11-206ENST00000533018 FAM167BQ9BTA0 163 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.91■□□□□ 0.39e-8■■■■■ 35.5
PCF11-206ENST00000533018 CCDC177Q9NQR7 707 aaPredicted RBP16.91■□□□□ 0.3
PCF11-206ENST00000533018 RIC8BQ9NVN3 520 aa16.91■□□□□ 0.3
PCF11-206ENST00000533018 TRMT6Q9UJA5 497 aaKnown RBP16.91■□□□□ 0.3
PCF11-206ENST00000533018 IGHV1-45A0A0A0MS14 117 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 GOLGA6L10A0A0M3HER8 536 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 WIPF3A6NGB9 483 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 LRRTM2O43300 516 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 FOXS1O43638 330 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 F10P00742 488 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 EDN3P14138 238 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 FDXRP22570 491 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 PTK6Q13882 451 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 PPIL6Q8IXY8 311 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 AGGF1Q8N302 714 aaeCLIP16.9■□□□□ 0.3
PCF11-206ENST00000533018 BCORP1Q8N888 145 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 NAT8LQ8N9F0 302 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 OR9A4Q8NGU2 314 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 GABPB2Q8TAK5 448 aaPredicted RBP16.9■□□□□ 0.3
PCF11-206ENST00000533018 MCOLN3Q8TDD5 553 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 METTL21AQ8WXB1 218 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 SIGLEC10Q96LC7 697 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 NDNQ99608 321 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 AARSD1Q9BTE6 412 aaKnown RBP16.9■□□□□ 0.3
PCF11-206ENST00000533018 TGIF2Q9GZN2 237 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 OLAHQ9NV23 265 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 TMEM184CQ9NVA4 438 aa16.9■□□□□ 0.3
PCF11-206ENST00000533018 CELA2AP08217 269 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 HRH2P25021 359 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 SKIV2L2P42285 1042 aaKnown RBP16.89■□□□□ 0.29
PCF11-206ENST00000533018 RGS4P49798 205 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 TBPL1P62380 186 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 RELAQ04206 551 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 FAM53BQ14153 422 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 CYP1B1Q16678 543 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 MINDY4Q4G0A6 757 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 ZNF787Q6DD87 383 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 ZC3H7AQ8IWR0 971 aaKnown RBP16.89■□□□□ 0.29
PCF11-206ENST00000533018 LRRC56Q8IYG6 542 aaPredicted RBP16.89■□□□□ 0.29
PCF11-206ENST00000533018 EEF1AKMT1Q8WVE0 214 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 CCDC138Q96M89 665 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 MACROD1Q9BQ69 325 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 ATG10Q9H0Y0 220 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 MRPS2Q9Y399 296 aaKnown RBP16.89■□□□□ 0.29
PCF11-206ENST00000533018 NEU2Q9Y3R4 380 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 SCN2AQ99250 2005 aa16.89■□□□□ 0.29
PCF11-206ENST00000533018 TRAV17A0A0B4J275 112 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 PABPN1LA6NDY0 278 aaKnown RBP16.88■□□□□ 0.29
PCF11-206ENST00000533018 PCDH17O14917 1159 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 JRKO75564 520 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 BMP10O95393 424 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 C8orf89P0DMQ9 161 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 ICAM2P13598 275 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 PGAM1P18669 254 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 MAGEA3P43357 314 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 PER3P56645 1201 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 RPS15AP62244 130 aaKnown RBP16.88■□□□□ 0.29
PCF11-206ENST00000533018 AP2B1P63010 937 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 LRRC8EQ6NSJ5 796 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 RIPOR1Q6ZS17 1223 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 MYO1HQ8N1T3 1032 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 ARHGEF39Q8N4T4 335 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 PSMF1Q92530 271 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 TAS2R13Q9NYV9 303 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 ASIC3Q9UHC3 531 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 ADAMTS6Q9UKP5 1117 aa16.88■□□□□ 0.29
PCF11-206ENST00000533018 FEZF1A0PJY2 475 aa16.87■□□□□ 0.29
PCF11-206ENST00000533018 EIF3FO00303 357 aaPredicted RBP16.87■□□□□ 0.29
PCF11-206ENST00000533018 E2F3O00716 465 aa16.87■□□□□ 0.29
PCF11-206ENST00000533018 C8GP07360 202 aa16.87■□□□□ 0.29
PCF11-206ENST00000533018 HIST1H2AGP0C0S8 130 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms