RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025		E7EQ34	232 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025		G3V2L1	256 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	TXNDC9	O14530	226 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	HAT1	O14929	419 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	HCRTR1	O43613	425 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	NRP2	O60462	931 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	DLX3	O60479	287 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	UGDH	O60701	494 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	OR2B3	O76000	313 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	UQCRH	P07919	91 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	MYL2	P10916	166 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	GSTM2	P28161	218 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	EEF1D	P29692	281 aa	Known RBP	19.86	■□□□□ 0.77
CD44-222	ENST00000526025	CYP4F3	Q08477	520 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	LAPTM5	Q13571	262 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	GTF2H2	Q13888	395 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	DEFB110	Q30KQ9	67 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	PWWP2B	Q6NUJ5	590 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	GTF2H2C	Q6P1K8	395 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	PHF21B	Q96EK2	531 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	L3HYPDH	Q96EM0	354 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	PTCD3	Q96EY7	689 aa	Known RBP	19.86	■□□□□ 0.77
CD44-222	ENST00000526025	SEC16B	Q96JE7	1060 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	LRFN5	Q96NI6	719 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	CTRC	Q99895	268 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	EFCAB11	Q9BUY7	163 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	CENPH	Q9H3R5	247 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	CCDC86	Q9H6F5	360 aa	Known RBP	19.86	■□□□□ 0.77
CD44-222	ENST00000526025	PCTP	Q9UKL6	214 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	SRPK3	Q9UPE1	567 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	PCDHGA4	Q9Y5G9	962 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025		A0A0J9YVX5	310 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	AGPS	O00116	658 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	ZSCAN9	O15535	394 aa	Predicted RBP	19.85	■□□□□ 0.77
CD44-222	ENST00000526025	H2AFY	O75367	372 aa	Known RBP	19.85	■□□□□ 0.77
CD44-222	ENST00000526025	WFS1	O76024	890 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	SIX3	O95343	332 aa	Predicted RBP	19.85	■□□□□ 0.77
CD44-222	ENST00000526025	DLGAP3	O95886	979 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	HBQ1	P09105	142 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	IMPDH1	P20839	514 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	AHR	P35869	848 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	GCGR	P47871	477 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	DNAJB13	P59910	316 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	GRM7	Q14831	915 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	UNQ6494/PRO21346	Q6UXR6	183 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	TEX9	Q8N6V9	391 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	MFSD9	Q8NBP5	474 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	SNIP1	Q8TAD8	396 aa	Known RBP	19.85	■□□□□ 0.77
CD44-222	ENST00000526025	FGF11	Q92914	225 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	RERG	Q96A58	199 aa	Predicted RBP	19.85	■□□□□ 0.77
CD44-222	ENST00000526025	GEMIN8	Q9NWZ8	242 aa	Known RBP	19.85	■□□□□ 0.77
CD44-222	ENST00000526025	ANGPTL3	Q9Y5C1	460 aa		19.85	■□□□□ 0.77
CD44-222	ENST00000526025	FER1L5	A0AVI2	2057 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025		H0YGG7	62 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	STMND1	H3BQB6	276 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	TM9SF1	O15321	606 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	PRPF4	O43172	522 aa	Known RBP eCLIP	19.84	■□□□□ 0.77
CD44-222	ENST00000526025	CPNE3	O75131	537 aa	Known RBP	19.84	■□□□□ 0.77
CD44-222	ENST00000526025	SCRG1	O75711	98 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	CPA3	P15088	417 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	SCTR	P47872	440 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	ARF3	P61204	181 aa	Predicted RBP	19.84	■□□□□ 0.77
CD44-222	ENST00000526025	PRTG	Q2VWP7	1150 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	PAGE2B	Q5JRK9	111 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	MANEA	Q5SRI9	462 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	ZNF678	Q5SXM1	525 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	AGBL2	Q5U5Z8	902 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	FRMPD2B	Q6IN97	320 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	GOLGA7	Q7Z5G4	137 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	TMEM126B	Q8IUX1	230 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	KRT78	Q8N1N4	520 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	TTL	Q8NG68	377 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	TCP10L	Q8TDR4	215 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	ZNF483	Q8TF39	744 aa	Predicted RBP	19.84	■□□□□ 0.77
CD44-222	ENST00000526025	TLCD1	Q96CP7	247 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	ULBP3	Q9BZM4	244 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	IGF2R	P11717	2491 aa		19.84	■□□□□ 0.77
CD44-222	ENST00000526025	LOC105369274	A0A096LPK9	316 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	LOC102723532	A0A0G2JNH3	316 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	LRRC14B	A6NHZ5	514 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	PRAMEF4	O60810	478 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	SPAG7	O75391	227 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	STK17B	O94768	372 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	CREB1	P16220	341 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	BCL6	P41182	706 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	SLC18A1	P54219	525 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	ARSF	P54793	590 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	PCBP4	P57723	403 aa	Known RBP	19.83	■□□□□ 0.77
CD44-222	ENST00000526025	VSX2	P58304	361 aa	Predicted RBP	19.83	■□□□□ 0.77
CD44-222	ENST00000526025	IRF8	Q02556	426 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	CHIT1	Q13231	466 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	XKR6	Q5GH73	641 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	WASHC2D	Q5SRD0	308 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	GARNL3	Q5VVW2	1013 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	PRAMEF9	Q5VWM5	478 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	LIPJ	Q5W064	366 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	VN1R4	Q7Z5H5	301 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	OR4N4	Q8N0Y3	316 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	ZNF655	Q8N720	491 aa	Predicted RBP	19.83	■□□□□ 0.77
CD44-222	ENST00000526025	TTC29	Q8NA56	475 aa	Predicted RBP	19.83	■□□□□ 0.77

Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms