RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PRPS1L1P21108 318 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 GRK5P34947 590 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 SLC19A1P41440 591 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 WNT3P56703 355 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 CBLL1Q75N03 491 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 HEATR4Q86WZ0 1026 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 GALNT13Q8IUC8 556 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 CHCHD4Q8N4Q1 142 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 GPR156Q8NFN8 814 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 UBTD2Q8WUN7 234 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 ALG14Q96F25 216 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 RLIMQ9NVW2 624 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 FZD4Q9ULV1 537 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 RNF6Q9Y252 685 aa8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 GOLGA4Q13439 2230 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-215ENST00000512632 M0R082 166 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 STSP08842 583 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 GPX2P18283 190 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 TIGD6Q17RP2 521 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 PROX2Q3B8N5 592 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 DGKKQ5KSL6 1271 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 C2orf49Q9BVC5 232 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 ITPAQ9BY32 194 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 OR51E2Q9H255 320 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 CCNB1IP1Q9NPC3 277 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 PCDHGA6Q9Y5G7 932 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 KCNE1BA0A087WTH5 132 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 ALOX12P18054 663 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 MAPK1P28482 360 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 RCVRNP35243 200 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 EIF2DP41214 584 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 PPP3CCP48454 512 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 TRPC1P48995 793 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 CRISP3P54108 245 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 CAP1Q01518 475 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 ACSM2AQ08AH3 577 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 ABRQ12979 859 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 TP53BP2Q13625 1128 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 TSTA3Q13630 321 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 CDKN3Q16667 212 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 GPR33Q49SQ1 333 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 ACSM2BQ68CK6 577 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 Q8N9G6 341 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 CHCHD6Q9BRQ6 235 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 RAD18Q9NS91 495 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 DNAJC11Q9NVH1 559 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 QPCTLQ9NXS2 382 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 ZDHHC3Q9NYG2 299 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 GPR83Q9NYM4 423 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 TAS2R16Q9NYV7 291 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 SUV39H1O43463 412 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 PCDH7O60245 1069 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 OXSR1O95747 527 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 C9P02748 559 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 GBAP04062 536 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 GRK3P35626 688 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 CTSOP43234 321 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 XKR6Q5GH73 641 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 STEAP3Q658P3 488 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 LYSMD2Q8IV50 215 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 NAGSQ8N159 534 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 SLC5A8Q8N695 610 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 GABARAPL1Q9H0R8 117 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 HSPE1-MOB4S4R3N1 261 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 CTSKP43235 329 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 CRYBA2P53672 197 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 SMARCB1Q12824 385 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 HKDC1Q2TB90 917 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF648Q5T619 568 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 ELMOD1Q8N336 334 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 DCAF4L2Q8NA75 395 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 SCAMP4Q969E2 229 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 MED8Q96G25 268 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 Q96MT0 163 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 PSD2Q9BQI7 771 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 OSGIN1Q9UJX0 560 aa8.95□□□□□ -0.98
LIMCH1-215ENST00000512632 GBF1Q92538 1859 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 TNFRSF11BO00300 401 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 GFRA2O00451 464 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 SNPHO15079 494 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 SPNP16150 400 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 CD22P20273 847 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 LHCGRP22888 699 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 ELAVL2Q12926 359 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF362Q5T0B9 420 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 FAM124AQ86V42 546 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 CCDC103Q8IW40 242 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 NLGN4XQ8N0W4 816 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 LMNTD1Q8N9Z9 388 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 HJURPQ8NCD3 748 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 OR4K1Q8NGD4 311 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 MYLIPQ8WY64 445 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 C7orf34Q96L11 122 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 BCL7BQ9BQE9 202 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 DUSP26Q9BV47 211 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 SLC12A9Q9BXP2 914 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 SIAEQ9HAT2 523 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 ANKMY1Q9P2S6 941 aa8.94□□□□□ -0.98
LIMCH1-215ENST00000512632 VPS29Q9UBQ0 182 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms