RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CEP57Q86XR8 500 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 KAT6BQ8WYB5 2073 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 ESAMQ96AP7 390 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 TBATAQ96M53 351 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 MAF1Q9H063 256 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 SMARCAD1Q9H4L7 1026 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 OPA3Q9H6K4 179 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 Q9N2K0 584 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 TMEM98Q9Y2Y6 226 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 IGHV3-20A0A0C4DH32 117 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 NPHP1O15259 732 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 TXNL1O43396 289 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 QDPRP09417 244 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 CETN2P41208 172 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 MATKP42679 507 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 IRX3P78415 501 aaPredicted RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 TRA2AQ13595 282 aaKnown RBP eCLIP1.93□□□□□ -2.1
NUP54-208ENST00000508604 SIM2Q14190 667 aaPredicted RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 SIX1Q15475 284 aaPredicted RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 RNASEH2BQ5TBB1 312 aaKnown RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 TAF3Q5VWG9 929 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 OR4A47Q6IF82 309 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 MMS22LQ6ZRQ5 1243 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 ADGRF2Q8IZF7 708 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 GPC2Q8N158 579 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 WDTC1Q8N5D0 677 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 NOA1Q8NC60 698 aaKnown RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 MCUQ8NE86 351 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 TDRD7Q8NHU6 1098 aaKnown RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 SEPHS2Q99611 448 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 CCDC3Q9BQI4 270 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 FTOQ9C0B1 505 aaKnown RBP eCLIP1.93□□□□□ -2.1
NUP54-208ENST00000508604 STRADBQ9C0K7 418 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 MARCH7Q9H992 704 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 PSD3Q9NYI0 1048 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 RUSC2Q8N2Y8 1516 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 TDRD9Q8NDG6 1382 aaKnown RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 HMGB1P1B2RPK0 211 aaPredicted RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 VILLO15195 856 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 IGHV2-70P01814 119 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 PROS1P07225 676 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 CALRP27797 417 aaKnown RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 VAMP7P51809 220 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 MPP1Q00013 466 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 AIMP2Q13155 320 aaKnown RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 SRSF9Q13242 221 aaKnown RBP eCLIP1.93□□□□□ -2.1
NUP54-208ENST00000508604 GPR33Q49SQ1 333 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 MCMDC2Q4G0Z9 681 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 JAKMIP3Q5VZ66 844 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 TCEANCQ8N8B7 351 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 PCYOX1LQ8NBM8 494 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 RPLP0P6Q8NHW5 317 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 ITLN1Q8WWA0 313 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 PIK3R3Q92569 461 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 SLC22A18Q96BI1 424 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 CFAP57Q96MR6 1250 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 DGAT2Q96PD7 388 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 PRRG4Q9BZD6 226 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 OSGEPL1Q9H4B0 414 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 MOB1AQ9H8S9 216 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 HACD3Q9P035 362 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 SEC63Q9UGP8 760 aaKnown RBP1.93□□□□□ -2.1
NUP54-208ENST00000508604 PADI2Q9Y2J8 665 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 ARID2Q68CP9 1835 aa1.93□□□□□ -2.1
NUP54-208ENST00000508604 MYH14Q7Z406 1995 aaKnown RBP1.92□□□□□ -2.1
NUP54-208ENST00000508604 TRIOBPQ9H2D6 2365 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 WI2-2373I1.2A0A1W2PRP0 233 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 TMEM221A6NGB7 291 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 E7ENQ6 273 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 J3KRW8 73 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 CD4P01730 458 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 HSP90AA1P07900 732 aaKnown RBP1.92□□□□□ -2.1
NUP54-208ENST00000508604 ZNF853P0CG23 659 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 UMPSP11172 480 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 GPX3P22352 226 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 GPR183P32249 361 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 G3BP1Q13283 466 aaKnown RBP eCLIP1.92□□□□□ -2.1
NUP54-208ENST00000508604 OPCMLQ14982 345 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 TIMM50Q3ZCQ8 353 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 MFSD12Q6NUT3 480 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 OR10Q1Q8NGQ4 319 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 USP6NLQ92738 828 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 NUS1Q96E22 293 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 SPDL1Q96EA4 605 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 ZNF799Q96GE5 643 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 PPM1MQ96MI6 270 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 CDRT15Q96T59 188 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 CDCA3Q99618 268 aaPredicted RBP1.92□□□□□ -2.1
NUP54-208ENST00000508604 YY1AP1Q9H869 796 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 ZNF69Q9UC07 566 aa1.92□□□□□ -2.1
NUP54-208ENST00000508604 IGHV3-16A0A0C4DH30 117 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 NEMP2A6NFY4 417 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 RPL37AP8A6NKH3 93 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 B4DLN1 442 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 F8VVB4 439 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 F8VWA3 439 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 SCGB1D1O95968 90 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 RPLP0P05388 317 aaKnown RBP1.91□□□□□ -2.1
NUP54-208ENST00000508604 CHRNA3P32297 505 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms