RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 TMPRSS11AQ6ZMR5 421 aa16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 TCTE3Q8IZS6 198 aa16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 OR5H6Q8NGV6 325 aa16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 OR10T2Q8NGX3 314 aa16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 RMDN1Q96DB5 314 aa16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 SMIM14Q96QK8 99 aa16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 TSEN34Q9BSV6 310 aaKnown RBP16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 PDFQ9HBH1 243 aa16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 TSR3Q9UJK0 312 aaKnown RBP16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 ARIH1Q9Y4X5 557 aaPredicted RBP16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 PCDHGA2Q9Y5H1 932 aa16.56■□□□□ 0.24
SQSTM1-211ENST00000506690 A0A0B4J293 547 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CCDC182A6NF36 153 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 GUCA1CO95843 209 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 UBL4AP11441 157 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 ODC1P11926 461 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 GDF5P43026 501 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 TBX4P57082 545 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 SCN1BQ07699 218 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 FAPQ12884 760 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CSTF3Q12996 717 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 EFR3AQ14156 821 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 RNF31Q96EP0 1072 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 FEVQ99581 238 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 NTMT1Q9BV86 223 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 BEX2Q9BXY8 128 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 P2RY12Q9H244 342 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 RUBCNLQ9H714 662 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 TMEM184CQ9NVA4 438 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 GABRQQ9UN88 632 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 SNX7Q9UNH6 387 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CFAP20Q9Y6A4 193 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 B4DXG7 233 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CLIC1O00299 241 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CPNE3O75131 537 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 ADRA2AP08913 450 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 GPX2P18283 190 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 LPOP22079 712 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 GJA5P36382 358 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 RPS19P39019 145 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 PTGER3P43115 390 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 IDH2P48735 452 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CD83Q01151 205 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 DOC2BQ14184 412 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CIR1Q86X95 450 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 KRT73Q86Y46 540 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 LAX1Q8IWV1 398 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 HOMEZQ8IX15 550 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 VWA5B2Q8N398 1253 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 EFHBQ8N7U6 833 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 FAM181AQ8N9Y4 354 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 TP53I13Q8NBR0 393 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 B3GNT7Q8NFL0 401 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 OR6J1Q8NGC5 347 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CHTF18Q8WVB6 975 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 SNAPC3Q92966 411 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 ACPTQ9BZG2 426 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CD244Q9BZW8 370 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 ATP13A2Q9NQ11 1180 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 ABCB8Q9NUT2 735 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 ZNF451Q9Y4E5 1061 aa16.55■□□□□ 0.24
SQSTM1-211ENST00000506690 CASTOR2A6NHX0 329 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 LOC730098B7Z3J9 87 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 NT5C1B-RDH14C9J2C7 533 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 POLR1CO15160 346 aaPredicted RBP16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 EBLN1P0CF75 366 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 ENGP17813 658 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 MYL9P24844 172 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 AZGP1P25311 298 aaKnown RBP16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 NKX3-2P78367 333 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 KCNJ10P78508 379 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 ARHGEF6Q15052 776 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 MED22Q15528 200 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 UPP1Q16831 310 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 DUSP28Q4G0W2 176 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 ZRANB3Q5FWF4 1079 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 MSANTD1Q6ZTZ1 278 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 GPR155Q7Z3F1 870 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 DEPDC4Q8N2C3 294 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 BHMTQ93088 406 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 COQ8BQ96D53 544 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 MGME1Q9BQP7 344 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 ASPNQ9BXN1 380 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 MS4A12Q9NXJ0 267 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 PCM1Q15154 2024 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 NUP214P35658 2090 aaPredicted RBP16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 DRGXA6NNA5 263 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 PDHXO00330 501 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 SEC14L5O43304 696 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 SNAI1O95863 264 aaPredicted RBP16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 PRLP01236 227 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 PRPS2P11908 318 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 TACR1P25103 407 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 YBEYP58557 167 aaPredicted RBP16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 PSPHP78330 225 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 TAB1Q15750 504 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 CCDC149Q6ZUS6 474 aa16.54■□□□□ 0.24
SQSTM1-211ENST00000506690 PLCZ1Q86YW0 608 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms