RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-209	ENST00000496445	SP140	Q13342	867 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	PHKG1	Q16816	387 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	SYT16	Q17RD7	645 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	ZXDC	Q2QGD7	858 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	FHL5	Q5TD97	284 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	THEMIS2	Q5TEJ8	643 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	GARNL3	Q5VVW2	1013 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	STEAP4	Q687X5	459 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	LRRC8E	Q6NSJ5	796 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	UGT3A1	Q6NUS8	523 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	TRMT10B	Q6PF06	316 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	KIAA0408	Q6ZU52	694 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	GALNT7	Q86SF2	657 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	ZC3H7A	Q8IWR0	971 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	KLHL7	Q8IXQ5	586 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	ZADH2	Q8N4Q0	377 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	CISD2	Q8N5K1	135 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	PPP4R1	Q8TF05	950 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	RERG	Q96A58	199 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	MMAB	Q96EY8	250 aa	Predicted RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	LINGO1	Q96FE5	620 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	THOC3	Q96J01	351 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	CCDC138	Q96M89	665 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	TRIM51	Q9BSJ1	452 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	NAT9	Q9BTE0	207 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	LHPP	Q9H008	270 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	DRC3	Q9H069	523 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	ZNF160	Q9HCG1	818 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	C14orf105	Q9NVL8	296 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	ASF1B	Q9NVP2	202 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	UTP6	Q9NYH9	597 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	TAS2R13	Q9NYV9	303 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	TRPC4	Q9UBN4	977 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	NOVA2	Q9UNW9	492 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	CHMP2B	Q9UQN3	213 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	CNTRL	Q7Z7A1	2325 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	SCN3A	Q9NY46	2000 aa		13.56	□□□□□ -0.24
VTI1A-209	ENST00000496445	GP1BB	P13224	206 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	FDXR	P22570	491 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	RGS4	P49798	205 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	MAT1A	Q00266	395 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	DR1	Q01658	176 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	EEF1A2	Q05639	463 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	MORF4L2	Q15014	288 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	NR6A1	Q15406	480 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	TEDDM1	Q5T9Z0	273 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	AGAP7P	Q5VUJ5	663 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	AGTRAP	Q6RW13	159 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	PRSS41	Q7RTY9	318 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	MYO1H	Q8N1T3	1032 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	AMER2	Q8N7J2	671 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	CFAP36	Q96G28	342 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	AGAP4	Q96P64	663 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	BARD1	Q99728	777 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	SLC29A3	Q9BZD2	475 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	TGIF2	Q9GZN2	237 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	ATG10	Q9H0Y0	220 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	PARVB	Q9HBI1	364 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	TMEM184C	Q9NVA4	438 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	IKZF3	Q9UKT9	509 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	CDC14A	Q9UNH5	594 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	TEX264	Q9Y6I9	313 aa		13.55	□□□□□ -0.24
VTI1A-209	ENST00000496445	TEX15	Q9BXT5	2789 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	FEZF1	A0PJY2	475 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	TXNDC9	O14530	226 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	SLC16A5	O15375	505 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	PRPF4	O43172	522 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	SEC31A	O94979	1220 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	AGFG2	O95081	481 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	CELA2A	P08217	269 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	ANXA5	P08758	320 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	VARS	P26640	1264 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	SOX11	P35716	441 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	BCL6	P41182	706 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	ITGA8	P53708	1063 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	CSNK1G2	P78368	415 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	FAM53B	Q14153	422 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	EIF2S3L	Q2VIR3	472 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	HECTD2	Q5U5R9	776 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	FAAH2	Q6GMR7	532 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	SYDE1	Q6ZW31	735 aa	Predicted RBP	13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	PDIK1L	Q8N165	341 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	MCOLN3	Q8TDD5	553 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	VPS50	Q96JG6	964 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	OLFM1	Q99784	485 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	MACROD1	Q9BQ69	325 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	YIPF2	Q9BWQ6	316 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	SGPP1	Q9BX95	441 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	MKKS	Q9NPJ1	570 aa	Predicted RBP	13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	PPAN	Q9NQ55	473 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	PYCARD	Q9ULZ3	195 aa		13.54	□□□□□ -0.24
VTI1A-209	ENST00000496445	CSMD1	Q96PZ7	3565 aa		13.53	□□□□□ -0.24
VTI1A-209	ENST00000496445	KCNE1B	A0A087WTH5	132 aa		13.53	□□□□□ -0.24
VTI1A-209	ENST00000496445	IGHV1-45	A0A0A0MS14	117 aa		13.53	□□□□□ -0.24
VTI1A-209	ENST00000496445	NSG1	A0A0A6YYJ2	146 aa		13.53	□□□□□ -0.24
VTI1A-209	ENST00000496445	TTI1	O43156	1089 aa		13.53	□□□□□ -0.24
VTI1A-209	ENST00000496445	JRK	O75564	520 aa		13.53	□□□□□ -0.24
VTI1A-209	ENST00000496445	KLHL18	O94889	574 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms