RNA–Protein interactions for RNA: ENST00000496375.1

CXCL12-208, Transcript of C-X-C motif chemokine ligand 12, human

TSL 5

Gene CXCL12, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CXCL12-208	ENST00000496375	FAM214A	Q32MH5	1076 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	CRB2	Q5IJ48	1285 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	WASHC2D	Q5SRD0	308 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	RBM20	Q5T481	1227 aa	Known RBP	13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	FRMPD2B	Q6IN97	320 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	LRRC8E	Q6NSJ5	796 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	UGT3A1	Q6NUS8	523 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	KIRREL2	Q6UWL6	708 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	FBXO15	Q8NCQ5	510 aa	Predicted RBP	13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	OR2L3	Q8NG85	312 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	HMGCLL1	Q8TB92	370 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	IFT81	Q8WYA0	676 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	GPR21	Q99679	349 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	CPNE1	Q99829	537 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	TAS2R13	Q9NYV9	303 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	NINJ2	Q9NZG7	142 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	CSAG2	Q9Y5P2	127 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	COPG1	Q9Y678	874 aa	Known RBP	13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	MAU2	Q9Y6X3	613 aa		13.73	□□□□□ -0.21
CXCL12-208	ENST00000496375	UQCRHL	A0A096LP55	91 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375		A0A0J9YVX5	310 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375		A0A1W2PPV9	198 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	HYKK	A2RU49	373 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	CXorf49	A8MYA2	514 aa	Predicted RBP	13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	PSIP1	O75475	530 aa	Known RBP	13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	MED26	O95402	600 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	UQCRH	P07919	91 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	RHOXF2B	P0C7M4	288 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	GP5	P40197	560 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	CDKN2D	P55273	166 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	YBX1	P67809	324 aa	Known RBP	13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	FASTK	Q14296	549 aa	Known RBP	13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	SLMAP	Q14BN4	828 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	TUBB8	Q3ZCM7	444 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	KBTBD12	Q3ZCT8	623 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	ACSBG2	Q5FVE4	666 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	HECTD2	Q5U5R9	776 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	IRAK1BP1	Q5VVH5	260 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	STRA8	Q7Z7C7	330 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	PARP9	Q8IXQ6	854 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	OR2A1	Q8NGT9	310 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	MAGEC3	Q8TD91	643 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	PPP4R1	Q8TF05	950 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	6e-6	■■■■■ 28.1
CXCL12-208	ENST00000496375	FAM136A	Q96C01	138 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	NDN	Q99608	321 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	RBBP8	Q99708	897 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	WDR77	Q9BQA1	342 aa	Predicted RBP	13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	RHOXF2	Q9BQY4	288 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	TXLNGY	Q9BZA5	131 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	CDC42EP4	Q9H3Q1	356 aa	Known RBP	13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	POPDC3	Q9HBV1	291 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	SEMA3G	Q9NS98	782 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	SPATA7	Q9P0W8	599 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	ERRFI1	Q9UJM3	462 aa	Predicted RBP	13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	NFU1	Q9UMS0	254 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	NTNG1	Q9Y2I2	539 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	KLK4	Q9Y5K2	254 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	NOTCH2	Q04721	2471 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	CNTRL	Q7Z7A1	2325 aa		13.72	□□□□□ -0.21
CXCL12-208	ENST00000496375	LOC105369274	A0A096LPK9	316 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	LOC102723532	A0A0G2JNH3	316 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	ANKUB1	A6NFN9	424 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	VSTM2B	A6NLU5	285 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	GFY	I3L273	518 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	WISP3	O95389	354 aa	Predicted RBP	13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	TSPAN12	O95859	305 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	EIF2S1	P05198	315 aa	Known RBP	13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	ERG	P11308	486 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	ELOA	Q14241	798 aa	Known RBP	13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	KLHL38	Q2WGJ6	581 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	AGAP7P	Q5VUJ5	663 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	CYHR1	Q6ZMK1	362 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	CAPN12	Q6ZSI9	719 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	RNF44	Q7L0R7	432 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	OR4N4	Q8N0Y3	316 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	OR11G2	Q8NGC1	345 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	FBF1	Q8TES7	1133 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	PDLIM5	Q96HC4	596 aa	Known RBP	13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	VPS39	Q96JC1	886 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	VPS50	Q96JG6	964 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	AGAP4	Q96P64	663 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	GPR22	Q99680	433 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	OLFM1	Q99784	485 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	CRB3	Q9BUF7	120 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	ACAT2	Q9BWD1	397 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	LHPP	Q9H008	270 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	ACSS3	Q9H6R3	686 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	ZNF304	Q9HCX3	659 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	STOX2	Q9P2F5	926 aa	Predicted RBP	13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	TRMT6	Q9UJA5	497 aa	Known RBP	13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	NOVA2	Q9UNW9	492 aa	Known RBP	13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	VWA7	Q9Y334	891 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	DOPEY1	Q5JWR5	2465 aa		13.71	□□□□□ -0.21
CXCL12-208	ENST00000496375	FAM95C	A0A1B0GW59	222 aa		13.7	□□□□□ -0.22
CXCL12-208	ENST00000496375	OR2A25	A4D2G3	310 aa		13.7	□□□□□ -0.22
CXCL12-208	ENST00000496375	MYO1C	O00159	1063 aa		13.7	□□□□□ -0.22
CXCL12-208	ENST00000496375	SLU7	O95391	586 aa	Known RBP	13.7	□□□□□ -0.22
CXCL12-208	ENST00000496375	LDLR	P01130	860 aa		13.7	□□□□□ -0.22
CXCL12-208	ENST00000496375	ABHD2	P08910	425 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms