RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 OR4K3Q96R72 315 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 CPNE1Q99829 537 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 ZDHHC18Q9NUE0 388 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 P4HTMQ9NXG6 502 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 NOVA2Q9UNW9 492 aaKnown RBP23.5■■□□□ 1.35
UPF3A-209ENST00000492270 MRPS2Q9Y399 296 aaKnown RBP23.5■■□□□ 1.35
UPF3A-209ENST00000492270 A6NL46 340 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 FAM155BO75949 473 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 WISP3O95389 354 aaPredicted RBP23.49■■□□□ 1.35
UPF3A-209ENST00000492270 FBLP22087 321 aaKnown RBP23.49■■□□□ 1.35
UPF3A-209ENST00000492270 HRH2P25021 359 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 EMP3P54852 163 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 RRADP55042 308 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 GUCY2DQ02846 1103 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 EFTUD2Q15029 972 aaKnown RBP eCLIP23.49■■□□□ 1.353e-6■■□□□ 13.4
UPF3A-209ENST00000492270 TSNQ15631 228 aaKnown RBP23.49■■□□□ 1.35
UPF3A-209ENST00000492270 PRMT9Q6P2P2 845 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 CYS1Q717R9 158 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 CTAGE3PQ8IX95 158 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 NOA1Q8NC60 698 aaKnown RBP23.49■■□□□ 1.35
UPF3A-209ENST00000492270 FDCSPQ8NFU4 85 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 MACROD1Q9BQ69 325 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 POPDC3Q9HBV1 291 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 MLXIPLQ9NP71 852 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 TXNDC16Q9P2K2 825 aa23.49■■□□□ 1.35
UPF3A-209ENST00000492270 PCDHGA9Q9Y5G4 932 aaKnown RBP23.49■■□□□ 1.35
UPF3A-209ENST00000492270 VSTM2BA6NLU5 285 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 PHGDHO43175 533 aaKnown RBP23.48■■□□□ 1.35
UPF3A-209ENST00000492270 FOXS1O43638 330 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 CEACAM4O75871 244 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 GP5P40197 560 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 BCL6P41182 706 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 SLC12A2P55011 1212 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 RPS15AP62244 130 aaKnown RBP23.48■■□□□ 1.35
UPF3A-209ENST00000492270 POU4F1Q01851 419 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 MEF2AQ02078 507 aaPredicted RBP23.48■■□□□ 1.35
UPF3A-209ENST00000492270 RAPSNQ13702 412 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 PRSS58Q8IYP2 241 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 SPATA6LQ8N4H0 392 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 FBF1Q8TES7 1133 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 IP6K3Q96PC2 410 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 GPR22Q99680 433 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 MESP1Q9BRJ9 268 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 NUDT9Q9BW91 350 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 EPN3Q9H201 632 aa23.48■■□□□ 1.35
UPF3A-209ENST00000492270 A0A0A6YYC8 382 aaPredicted RBP23.47■■□□□ 1.35
UPF3A-209ENST00000492270 I3L1I5 382 aaPredicted RBP23.47■■□□□ 1.35
UPF3A-209ENST00000492270 PEX12O00623 359 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 LCMT2O60294 686 aaKnown RBP23.47■■□□□ 1.35
UPF3A-209ENST00000492270 ALOX12BO75342 701 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 MMP11P24347 488 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 GMPRP36959 345 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 PGDP52209 483 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 USP10Q14694 798 aaKnown RBP23.47■■□□□ 1.35
UPF3A-209ENST00000492270 VWA2Q5GFL6 755 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 DCAF10Q5QP82 559 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 GARNL3Q5VVW2 1013 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 MMGT1Q8N4V1 131 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 PPM1NQ8N819 430 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 AMER3Q8N944 861 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 STT3BQ8TCJ2 826 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 ATL1Q8WXF7 558 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 ANKRD7Q92527 254 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 MMABQ96EY8 250 aaPredicted RBP23.47■■□□□ 1.35
UPF3A-209ENST00000492270 HAUS8Q9BT25 410 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 CTNNAL1Q9UBT7 734 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 DMGDHQ9UI17 866 aaKnown RBP23.47■■□□□ 1.35
UPF3A-209ENST00000492270 ANAPC2Q9UJX6 822 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 NXT1Q9UKK6 140 aaKnown RBP23.47■■□□□ 1.35
UPF3A-209ENST00000492270 OARD1Q9Y530 152 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 HS3ST3B1Q9Y662 390 aa23.47■■□□□ 1.35
UPF3A-209ENST00000492270 SOCS6O14544 535 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 TLE1Q04724 770 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 KLC1Q07866 573 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 KLRB1Q12918 225 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 DSG2Q14126 1118 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 CATSPEREQ5SY80 951 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 UBAP2Q5T6F2 1119 aaKnown RBP23.46■■□□□ 1.35
UPF3A-209ENST00000492270 MVB12AQ96EY5 273 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 TSNARE1Q96NA8 513 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 SCN2AQ99250 2005 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 EGFL8Q99944 293 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 DRC3Q9H069 523 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 SPNS1Q9H2V7 528 aa23.46■■□□□ 1.35
UPF3A-209ENST00000492270 ZNF282Q9UDV7 671 aaPredicted RBP23.46■■□□□ 1.35
UPF3A-209ENST00000492270 KCNE1BA0A087WTH5 132 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 AGPSO00116 658 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 TXNDC9O14530 226 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 ZGLP1P0C6A0 271 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 STX2P32856 288 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 CASRP41180 1078 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 OCA2Q04671 838 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 SYT16Q17RD7 645 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 C18orf21Q32NC0 220 aaPredicted RBP23.45■■□□□ 1.34
UPF3A-209ENST00000492270 FRA10AC1Q70Z53 315 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 PRSS41Q7RTY9 318 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 ADAMTSL2Q86TH1 951 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 NEIL2Q969S2 332 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 MIEF2Q96C03 454 aa23.45■■□□□ 1.34
UPF3A-209ENST00000492270 TSPAN17Q96FV3 270 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms