RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DCTP40126 519 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 LMAN1P49257 510 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 MMP15P51511 669 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ARSEP51690 589 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 NR0B1P51843 470 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 MFAP4P55083 255 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CDH11P55287 796 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 POLR2FP61218 127 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 DCAF7P61962 342 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 RUNX1T1Q06455 604 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 AIMP2Q13155 320 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 MFAP5Q13361 173 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 PPIGQ13427 754 aaKnown RBP eCLIP2□□□□□ -2.09
HMGB1-208ENST00000490788 BTG3Q14201 252 aaPredicted RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 SMC1AQ14683 1233 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 SLMAPQ14BN4 828 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ANGPT1Q15389 498 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TAF13Q15543 124 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 KRTAP21-3Q3LHN1 58 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM30BQ3MIR4 351 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 LRRC23Q53EV4 343 aaPredicted RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 PARP10Q53GL7 1025 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 GCNT6Q5T4J0 391 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ARHGEF16Q5VV41 709 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM198Q66K66 360 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 KIAA0930Q6ICG6 404 aaPredicted RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 GALNT17Q6IS24 598 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 FBXL22Q6P050 247 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 PSRC1Q6PGN9 363 aaPredicted RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 FIP1L1Q6UN15 594 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 TMCO3Q6UWJ1 677 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CCBE1Q6UXH8 406 aaPredicted RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 C15orf39Q6ZRI6 1047 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CLEC17AQ6ZS10 378 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 SH2D5Q6ZV89 423 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF534Q76KX8 674 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 MCM10Q7L590 875 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 IQCA1Q86XH1 822 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 LRRC49Q8IUZ0 686 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CEP97Q8IW35 865 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 MFN1Q8IWA4 741 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 SYCP3Q8IZU3 236 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 KIRREL3Q8IZU9 778 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 DNAJC22Q8N4W6 341 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ANKRD52Q8NB46 1076 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CCDC112Q8NEF3 446 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TBC1D16Q8TBP0 767 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TAS1R2Q8TE23 839 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ANKRD49Q8WVL7 239 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2□□□□□ -2.09
HMGB1-208ENST00000490788 ARHGAP45Q92619 1136 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 SLC35B4Q969S0 331 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 JAKMIP2Q96AA8 810 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF524Q96C55 264 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 LGALS12Q96DT0 336 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 RBM41Q96IZ5 413 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 SPATA17Q96L03 361 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 LRR1Q96L50 414 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 CEP295NLQ96MC4 621 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 DACH2Q96NX9 599 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 GSDMAQ96QA5 445 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TRAF4Q9BUZ4 470 aaPredicted RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 RTN4RQ9BZR6 473 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 LRRCC1Q9C099 1032 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 XPO4Q9C0E2 1151 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 HHATLQ9HCP6 504 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 HAUS2Q9NVX0 235 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ARHGEF38Q9NXL2 777 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TAS2R14Q9NYV8 317 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 COQ3Q9NZJ6 369 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TUBGCP4Q9UGJ1 667 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TSPYL4Q9UJ04 414 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF215Q9UL58 517 aaPredicted RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 EXO1Q9UQ84 846 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 NIP7Q9Y221 180 aaKnown RBP eCLIP2□□□□□ -2.09
HMGB1-208ENST00000490788 PRELID1Q9Y255 219 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF510Q9Y2H8 683 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 WDR37Q9Y2I8 494 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 RABGAP1Q9Y3P9 1069 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 TIMM22Q9Y584 194 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2□□□□□ -2.091e-6■□□□□ 8.1
HMGB1-208ENST00000490788 SPTBN2O15020 2390 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 RGPD2P0DJD1 1756 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 MAST2Q6P0Q8 1798 aa2□□□□□ -2.09
HMGB1-208ENST00000490788 HELZ2Q9BYK8 2649 aaKnown RBP2□□□□□ -2.09
HMGB1-208ENST00000490788 BPTFQ12830 3046 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 TECTAO75443 2155 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 FLT1P17948 1338 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 STK36Q9NRP7 1315 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 C2CD3Q4AC94 2353 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 A0A1B0GVG6 124 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 EPOPA6NHQ4 379 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 KBTBD13C9JR72 458 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 DNM1LO00429 736 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 SH2B2O14492 632 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-208ENST00000490788 NDUFAB1O14561 156 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 SLC30A4O14863 429 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 CHUKO15111 745 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 VILLO15195 856 aa1.99□□□□□ -2.09
HMGB1-208ENST00000490788 P4HA2O15460 535 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms