RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 DOLPP1Q86YN1 238 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 CRLF3Q8IUI8 442 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 SHISA5Q8N114 240 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 OR9A1PQ8NGU1 263 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 SLC35B2Q8TB61 432 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 PHF10Q8WUB8 498 aaKnown RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 SMPDL3AQ92484 453 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 SDCCAG3Q96C92 435 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 FRMD6Q96NE9 622 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 CYTH2Q99418 400 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 NPAS2Q99743 824 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 TREX2Q9BQ50 279 aaPredicted RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 UTP23Q9BRU9 249 aaKnown RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 ETNK1Q9HBU6 452 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 PCYOX1Q9UHG3 505 aa13.19□□□□□ -0.3
VARS-227ENST00000489979 ZNF469Q96JG9 3925 aaPredicted RBP13.19□□□□□ -0.3
VARS-227ENST00000489979 INTS1Q8N201 2190 aaKnown RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 OR2W5A6NFC9 320 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 E9PLN8 166 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 TXNDC9O14530 226 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 ADAM10O14672 748 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 FANCGO15287 622 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 CD3EAPO15446 510 aaKnown RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 MAN1A2O60476 641 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 SUN1O94901 812 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 ERGP11308 486 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 PKMP14618 531 aaKnown RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 CD1EP15812 388 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 AVPR1BP47901 424 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 PRDX1Q06830 199 aaKnown RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 TBX2Q13207 712 aaPredicted RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 FAM53BQ14153 422 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 MEP1AQ16819 746 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 GALNTL5Q7Z4T8 443 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 CHERPQ8IWX8 916 aaKnown RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 GHDCQ8N2G8 530 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 TMEM178AQ8NBL3 297 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 OR9A4Q8NGU2 314 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 CA5BP1Q8WTZ4 195 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 DMRTA2Q96SC8 542 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 VKORC1Q9BQB6 163 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 TRIM51Q9BSJ1 452 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 UTP6Q9NYH9 597 aaKnown RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 C19orf25Q9UFG5 118 aaPredicted RBP13.18□□□□□ -0.3
VARS-227ENST00000489979 TAC3Q9UHF0 121 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 DUSP10Q9Y6W6 482 aa13.18□□□□□ -0.3
VARS-227ENST00000489979 SOWAHDA6NJG2 315 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 GABRR3A8MPY1 467 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 ARHGEF33A8MVX0 844 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 PRRG2O14669 202 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 NDUFS3O75489 264 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 MATN4O95460 622 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 TSPAN12O95859 305 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 STATHP02808 62 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 EZRP15311 586 aaKnown RBP13.17□□□□□ -0.3
VARS-227ENST00000489979 RPS3P23396 243 aaKnown RBP eCLIP13.17□□□□□ -0.34e-9■■■■□ 25.5
VARS-227ENST00000489979 ART1P52961 327 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 EIF3BP55884 814 aaKnown RBP13.17□□□□□ -0.3
VARS-227ENST00000489979 OC90Q02509 493 aaPredicted RBP13.17□□□□□ -0.3
VARS-227ENST00000489979 KLF1Q13351 362 aaPredicted RBP13.17□□□□□ -0.3
VARS-227ENST00000489979 NDUFA9Q16795 377 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 ANKRD20A4Q4UJ75 823 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 CTSL3PQ5NE16 218 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 ICE2Q659A1 982 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 ADCK2Q7Z695 626 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 ANKRD37Q7Z713 158 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 LRRC6Q86X45 466 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 PLD3Q8IV08 490 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 FAM98AQ8NCA5 519 aaKnown RBP13.17□□□□□ -0.3
VARS-227ENST00000489979 PPHLN1Q8NEY8 458 aaKnown RBP13.17□□□□□ -0.3
VARS-227ENST00000489979 PEX13Q92968 403 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 CHRAC1Q9NRG0 131 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 PPT2Q9UMR5 302 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 HCFC1P51610 2035 aa13.17□□□□□ -0.3
VARS-227ENST00000489979 TCRBV7S2A1N4TA0A589 114 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 E7EVH7 732 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 H0YIG0 161 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 MYO1CO00159 1063 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 HAT1O14929 419 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 CCNDBP1O95273 360 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 NADKO95544 446 aaPredicted RBP13.16□□□□□ -0.3
VARS-227ENST00000489979 SP1P08047 785 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 CYC1P08574 325 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 FDFT1P37268 417 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 PNLIPRP1P54315 467 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 GBX1Q14549 363 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 EXT1Q16394 746 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 RNFT1Q5M7Z0 435 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 SLC25A25Q6KCM7 469 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 PRSS41Q7RTY9 318 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 FGD2Q7Z6J4 655 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 CCDC170Q8IYT3 715 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 EID3Q8N140 333 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 TC2NQ8N9U0 490 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 PPFIBP2Q8ND30 876 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 OR51Q1Q8NH59 317 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 M1APQ8TC57 530 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 FAM136AQ96C01 138 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 CALR3Q96L12 384 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms