RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SLC22A17Q8WUG5 538 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 FCRL4Q96PJ5 515 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ACBD6Q9BR61 282 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 MIOSQ9NXC5 875 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 TRAV19A0A0A6YYK7 116 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ISM1B1AKI9 464 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 PGRMC2O15173 223 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 SDC2P34741 201 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 HSPB3Q12988 150 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 PTCHD3Q3KNS1 767 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 GCNT6Q5T4J0 391 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ZNF613Q6PF04 617 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 BPIFB1Q8TDL5 484 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 MYO19Q96H55 970 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 GPR78Q96P69 363 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 TMED9Q9BVK6 235 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 CPNE5Q9HCH3 593 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 THG1LQ9NWX6 298 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 PADI3Q9ULW8 664 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 IFT52Q9Y366 437 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 PCDHB7Q9Y5E2 793 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ARFGEF1Q9Y6D6 1849 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 FKTNO75072 461 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 NME6O75414 186 aaPredicted RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 KLHL18O94889 574 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 CORO1AP31146 461 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 CACNG1Q06432 222 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ACOX1Q15067 660 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ZBTB6Q15916 424 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 SETMARQ53H47 684 aaPredicted RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 DPY19L3Q6ZPD9 716 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 C1orf52Q8N6N3 182 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 EXOSC8Q96B26 276 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 EGLN2Q96KS0 407 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 MROQ9BYG7 248 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 RNF167Q9H6Y7 350 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ABCB8Q9NUT2 735 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 MAT2BQ9NZL9 334 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 GJD2Q9UKL4 321 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 HAS3O00219 553 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 MANBAO00462 879 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 OR5F1O95221 314 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 TGFB1P01137 390 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 PRPS2P11908 318 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 HOXA11P31270 313 aaPredicted RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 MLLT10P55197 1068 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 MAMDC4Q6UXC1 1216 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 MACC1Q6ZN28 852 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 CLECL1Q8IZS7 167 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 METTL4Q8N3J2 472 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 ZNF433Q8N7K0 673 aaPredicted RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 OR6C4Q8NGE1 309 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 IMP4Q96G21 291 aaKnown RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 RHNO1Q9BSD3 238 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 C2orf49Q9BVC5 232 aaPredicted RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 OR2B2Q9GZK3 357 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 SAGE1Q9NXZ1 904 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 TAS2R16Q9NYV7 291 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 MANSC4A6NHS7 340 aaPredicted RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 NUPL2O15504 423 aaKnown RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 IGSF6O95976 241 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 POLR2EP19388 210 aaKnown RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 CD72P21854 359 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 RPL9P32969 192 aaKnown RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 C22orf42Q6IC83 251 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 TUBA3EQ6PEY2 450 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 IGSF8Q969P0 613 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 TM9SF3Q9HD45 589 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 COL1A2P08123 1366 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 LDB2O43679 373 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 UGT2B17O75795 530 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 PRG2P13727 222 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 ANXA8P13928 327 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 AKR1A1P14550 325 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 UQCRC1P31930 480 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 ZNF181Q2M3W8 571 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 LILRB4Q8NHJ6 448 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 SLC2A13Q96QE2 648 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 YIPF4Q9BSR8 244 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 GPN2Q9H9Y4 310 aaPredicted RBP13.12□□□□□ -0.31
USP42-206ENST00000479544 GTF2IRD1Q9UHL9 959 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 PCTPQ9UKL6 214 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 PCDHB8Q9UN66 801 aa13.12□□□□□ -0.31
USP42-206ENST00000479544 WDR90Q96KV7 1748 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 TMEM221A6NGB7 291 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 CPN2P22792 545 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 RAB8AP61006 207 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 AQP6Q13520 282 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 TAF1AQ15573 450 aaPredicted RBP13.11□□□□□ -0.31
USP42-206ENST00000479544 MS4A13Q5J8X5 152 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 KANK2Q63ZY3 851 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 PIANPQ8IYJ0 282 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 NFKBIDQ8NI38 313 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 TMEM40Q8WWA1 233 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 CLP1Q92989 425 aaKnown RBP13.11□□□□□ -0.31
USP42-206ENST00000479544 RDH12Q96NR8 316 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 GAL3ST1Q99999 423 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 KLHL28Q9NXS3 571 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 PCDHB1Q9Y5F3 818 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms