RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 HSD11B1P28845 292 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 MAP2K3P46734 347 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 DPY19L3Q6ZPD9 716 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 SLC2A11Q9BYW1 496 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 FAM86C1Q9NVL1 165 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 PAK1IP1Q9NWT1 392 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 ABCC6O95255 1503 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 TTC34A8MYJ7 566 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 ATE1O95260 518 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 FERD3LQ96RJ6 166 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 INMT-MINDY4F8WBC2 141 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 SHMT1P34896 483 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 HACD2Q6Y1H2 254 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 FAM43BQ6ZT52 329 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 XYLT1Q86Y38 959 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 MCEMP1Q8IX19 187 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 COPS5Q92905 334 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 TMBIM1Q969X1 311 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 TRIB3Q96RU7 358 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 SCN3AQ9NY46 2000 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 C9IYK1 514 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 OXSR1O95747 527 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 HDCP19113 662 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 PRKXP51817 358 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 GJA9P57773 515 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 RHBDF2Q6PJF5 856 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 SCML4Q8N228 414 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 ACBD4Q8NC06 268 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 COQ8BQ96D53 544 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 SPACA7Q96KW9 195 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 ELAC1Q9H777 363 aaKnown RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 MALT1Q9UDY8 824 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 AKAP11Q9UKA4 1901 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 C1orf167Q5SNV9 1468 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 GXYLT2A0PJZ3 443 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 RASGRP1O95267 797 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 CSTBP04080 98 aaKnown RBP12.96□□□□□ -0.33
COL6A3-209ENST00000472056 DPP6P42658 865 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 HERV-K104P61576 105 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 TSTD2Q5T7W7 516 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 CLEC6AQ6EIG7 209 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 ARSKQ6UWY0 536 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 C7orf61Q8IZ16 206 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 NTAN1Q96AB6 310 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 SCRN2Q96FV2 425 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 GPR21Q99679 349 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 NANSQ9NR45 359 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 TMPRSS11EQ9UL52 423 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 TLR5O60602 858 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 MAFKO60675 156 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 DNASE1P24855 282 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 TNFRSF25Q93038 417 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 RAD9AQ99638 391 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 TMEM121BQ9BXQ6 578 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-209ENST00000472056 SERINC1Q9NRX5 453 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 FMO3P31513 532 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 SP140Q13342 867 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 TLR1Q15399 786 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 BCL2A1Q16548 175 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 ARL5BQ96KC2 179 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 TXN2Q99757 166 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 SLC35A5Q9BS91 424 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 NPAP1Q9NZP6 1156 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 RAI2Q9Y5P3 530 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 CACNA1SQ13698 1873 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 SPATA31C2B4DYI2 1134 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 E9PAM4 449 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 POP4O95707 220 aaKnown RBP12.96□□□□□ -0.33
COL6A3-209ENST00000472056 FAM163BP0C2L3 166 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 CD6P30203 668 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 PNCKQ6P2M8 343 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 C15orf52Q6ZUT6 534 aaKnown RBP12.96□□□□□ -0.33
COL6A3-209ENST00000472056 CYP4X1Q8N118 509 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 TMEM68Q96MH6 324 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 PPA2Q9H2U2 334 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 RIMS1Q86UR5 1692 aaKnown RBP12.96□□□□□ -0.33
COL6A3-209ENST00000472056 LAMB4A4D0S4 1761 aa12.96□□□□□ -0.33
COL6A3-209ENST00000472056 IDSP22304 550 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 WEE1P30291 646 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 LSAMPQ13449 338 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 RFWD3Q6PCD5 774 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 MFSD1Q9H3U5 465 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 BIN3Q9NQY0 253 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 PPM1HQ9ULR3 514 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 ZSCAN5BA6NJL1 495 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 NARSO43776 548 aaKnown RBP12.96□□□□□ -0.34
COL6A3-209ENST00000472056 AVPR1BP47901 424 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 ARSFP54793 590 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 OR7G2Q8NG99 324 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 COQ8AQ8NI60 647 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 NEIL3Q8TAT5 605 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 MAPK15Q8TD08 544 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 B3GAT2Q9NPZ5 323 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 PACSIN3Q9UKS6 424 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 CDH11P55287 796 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 DSTNP60981 165 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 CES5AQ6NT32 575 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 REEP3Q6NUK4 255 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 OR51E2Q9H255 320 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms