RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	PRSS35	Q8N3Z0	413 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	FAM89B	Q8N5H3	189 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	KLHDC1	Q8N7A1	406 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR7G3	Q8NG95	312 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR5AP2	Q8NGF4	316 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	GRK7	Q8WTQ7	553 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	APOBEC4	Q8WW27	367 aa	Known RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	METTL21A	Q8WXB1	218 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	BSCL2	Q96G97	398 aa	Predicted RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	LRR1	Q96L50	414 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	KLHL5	Q96PQ7	755 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	LPAR4	Q99677	370 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	LITAF	Q99732	161 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	DESI2	Q9BSY9	194 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF350	Q9GZX5	532 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	UBQLN3	Q9H347	655 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	RIMS4	Q9H426	269 aa	Predicted RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF696	Q9H7X3	374 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	TMEM206	Q9H813	350 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	RAVER2	Q9HCJ3	691 aa	Known RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	PHPT1	Q9NRX4	125 aa	Predicted RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	MAN2C1	Q9NTJ4	1040 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	RNF186	Q9NXI6	227 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	ARMCX3	Q9UH62	379 aa	Predicted RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	IL36A	Q9UHA7	158 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	PRDM4	Q9UKN5	801 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	PA2G4	Q9UQ80	394 aa	Known RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	KLK4	Q9Y5K2	254 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	TRAV18	A0A075B6X5	111 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044		A0A0U1RQK1	487 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	ILVBL	A1L0T0	632 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF320	A2RRD8	509 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	PRSS46	E5RG02	174 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	TEX28	O15482	410 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	SEC24A	O95486	1093 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLC2A2	P11168	524 aa	Predicted RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	EEF2	P13639	858 aa	Known RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	MT3	P25713	68 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	DUT	P33316	252 aa	Known RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	MAP2K2	P36507	400 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	FRK	P42685	505 aa	Predicted RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	IER3	P46695	156 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	DNA2	P51530	1060 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	SRSF9	Q13242	221 aa	Known RBP eCLIP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	TRIM29	Q14134	588 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	RBM39	Q14498	530 aa	Known RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF74	Q16587	644 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF789	Q5FWF6	425 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	FFAR4	Q5NUL3	377 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	CASC4	Q6P4E1	433 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	PRUNE1	Q86TP1	453 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	HOOK3	Q86VS8	718 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	MEX3D	Q86XN8	651 aa	Known RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	CREBRF	Q8IUR6	639 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	SIAH3	Q8IW03	269 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	DCLK2	Q8N568	766 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	CCDC63	Q8NA47	563 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	UXS1	Q8NBZ7	420 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLC37A3	Q8NCC5	494 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	DDHD1	Q8NEL9	900 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	DBF4B	Q8NFT6	615 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	MRGPRD	Q8TDS7	321 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	GATAD1	Q8WUU5	269 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNRF4	Q8WWF5	429 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	CENPT	Q96BT3	561 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	SNRNP40	Q96DI7	357 aa	Known RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	GMPPA	Q96IJ6	420 aa	Predicted RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	BTBD9	Q96Q07	612 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	GPATCH1	Q9BRR8	931 aa	Known RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	FSD1	Q9BTV5	496 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	RBM4	Q9BWF3	364 aa	Known RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	C10orf88	Q9H8K7	445 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	SEPT10	Q9P0V9	454 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	ELF5	Q9UKW6	265 aa	Predicted RBP	3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044	PPP2R2C	Q9Y2T4	447 aa		3.37	□□□□□ -1.87
PTCD3-209	ENST00000472044		A0A087X002	238 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	MEIOC	A2RUB1	952 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	SNURFL	B1AK76	121 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	KBTBD13	C9JR72	458 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	CCER2	I3L3R5	266 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLC33A1	O00400	549 aa	Predicted RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	FPGT	O14772	594 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	ST8SIA3	O43173	380 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	EDIL3	O43854	480 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	YES1	P07947	543 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	HMBS	P08397	361 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	ALDH1B1	P30837	517 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	KCNJ1	P48048	391 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	LEPR	P48357	1165 aa	Known RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	ASIC1	P78348	528 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	NFE2L1	Q14494	772 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLMAP	Q14BN4	828 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	KBTBD12	Q3ZCT8	623 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF770	Q6IQ21	691 aa	Predicted RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	KLHL10	Q6JEL2	608 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	TTC27	Q6P3X3	843 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	PRSS55	Q6UWB4	352 aa	Predicted RBP	3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	ANKRD46	Q86W74	232 aa		3.36	□□□□□ -1.87
PTCD3-209	ENST00000472044	LACC1	Q8IV20	430 aa		3.36	□□□□□ -1.87

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