RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ZNF285Q96NJ3 590 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 GBP5Q96PP8 586 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 CCDC77Q9BR77 488 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 PRORYQ9H606 182 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 CUTCQ9NTM9 273 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 NUDT4Q9NZJ9 180 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 CPSF2Q9P2I0 782 aaKnown RBP11.14□□□□□ -0.63
CUX1-207ENST00000465461 PSMC3IPQ9P2W1 217 aaPredicted RBP11.14□□□□□ -0.63
CUX1-207ENST00000465461 PTBP2Q9UKA9 531 aaKnown RBP11.14□□□□□ -0.63
CUX1-207ENST00000465461 RUVBL1Q9Y265 456 aaKnown RBP11.14□□□□□ -0.63
CUX1-207ENST00000465461 MRPS2Q9Y399 296 aaKnown RBP11.14□□□□□ -0.63
CUX1-207ENST00000465461 PCDHGA4Q9Y5G9 962 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 AP1M2Q9Y6Q5 423 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 MAU2Q9Y6X3 613 aa11.14□□□□□ -0.63
CUX1-207ENST00000465461 MDC1Q14676 2089 aaKnown RBP11.13□□□□□ -0.63
CUX1-207ENST00000465461 IQANK1A0A1B0GTG1 560 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 TLDC2A0PJX2 215 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 K7ENP7 123 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 MAP2K7O14733 419 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 FFAR3O14843 346 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 GPR42O15529 346 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 OR1F1O43749 312 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 PRAMEF4O60810 478 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 STK16O75716 305 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 CAPN1P07384 714 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 PRKAR1AP10644 381 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 PYGBP11216 843 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 EZRP15311 586 aaKnown RBP11.13□□□□□ -0.63
CUX1-207ENST00000465461 EPORP19235 508 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 ITGAXP20702 1163 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 OR1D4P47884 311 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 CCR8P51685 355 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 GRM7Q14831 915 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 NAA25Q14CX7 972 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 PFKFB4Q16877 469 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 TCTE1Q5JU00 501 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 PRAMEF9Q5VWM5 478 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 MLIPQ5VWP3 458 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 RHBDD2Q6NTF9 364 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 INO80CQ6PI98 192 aaPredicted RBP11.13□□□□□ -0.63
CUX1-207ENST00000465461 NXPE4Q6UWF7 544 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 TIFABQ6ZNK6 161 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 VN1R4Q7Z5H5 301 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 TTC29Q8NA56 475 aaPredicted RBP11.13□□□□□ -0.63
CUX1-207ENST00000465461 ABHD11Q8NFV4 315 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 RERGQ96A58 199 aaPredicted RBP11.13□□□□□ -0.63
CUX1-207ENST00000465461 KIAA1143Q96AT1 154 aaPredicted RBP11.13□□□□□ -0.63
CUX1-207ENST00000465461 MOCOSQ96EN8 888 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 C10orf90Q96M02 699 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 LRFN5Q96NI6 719 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 CD244Q9BZW8 370 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 RRAGDQ9NQL2 400 aaPredicted RBP11.13□□□□□ -0.63
CUX1-207ENST00000465461 SLC22A11Q9NSA0 550 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 TXLNGQ9NUQ3 528 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 TMEM216Q9P0N5 145 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 LHX6Q9UPM6 363 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 FER1L5A0AVI2 2057 aa11.13□□□□□ -0.63
CUX1-207ENST00000465461 FITM1A5D6W6 292 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 TK2O00142 265 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 SIX3O95343 332 aaPredicted RBP11.12□□□□□ -0.63
CUX1-207ENST00000465461 SERPIND1P05546 499 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 HBQ1P09105 142 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 FURINP09958 794 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 SBK3P0C264 359 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 GFAPP14136 432 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 AGXTP21549 392 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 HRH2P25021 359 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 GGT5P36269 586 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 CDC16Q13042 620 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 ERV3-1Q14264 604 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 RBBP5Q15291 538 aaKnown RBP11.12□□□□□ -0.63
CUX1-207ENST00000465461 PRTGQ2VWP7 1150 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 KLC3Q6P597 504 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 FAM198BQ6UWH4 519 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 ZNF517Q6ZMY9 492 aaPredicted RBP11.12□□□□□ -0.63
CUX1-207ENST00000465461 SLCO4C1Q6ZQN7 724 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 PRSS41Q7RTY9 318 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 CCDC91Q7Z6B0 441 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 KLHDC8AQ8IYD2 350 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 TCAIMQ8N3R3 496 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 ENDOVQ8N8Q3 282 aaKnown RBP11.12□□□□□ -0.63
CUX1-207ENST00000465461 MFSD9Q8NBP5 474 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 KCT2Q8NC54 265 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 OR4K1Q8NGD4 311 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 RHEBL1Q8TAI7 183 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 STARD8Q92502 1023 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 CAVIN3Q969G5 261 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 MTBPQ96DY7 904 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 PHF21BQ96EK2 531 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 CABS1Q96KC9 395 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 ACTL8Q9H568 366 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 ACSS2Q9NR19 701 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 DNAJC11Q9NVH1 559 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 XPR1Q9UBH6 696 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 FETUBQ9UGM5 382 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 RAB21Q9UL25 225 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 FARSAQ9Y285 508 aaKnown RBP11.12□□□□□ -0.63
CUX1-207ENST00000465461 KCNE2Q9Y6J6 123 aa11.12□□□□□ -0.63
CUX1-207ENST00000465461 KCNE1BA0A087WTH5 132 aa11.11□□□□□ -0.63
CUX1-207ENST00000465461 A0A0A6YYC8 382 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms