RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 FAM131AQ6UXB0 335 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 BCDIN3DQ7Z5W3 292 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF605Q86T29 641 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 UMODL1-AS1Q8N2C9 162 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 OR7D4Q8NG98 312 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 SPPL2AQ8TCT8 520 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 TMEM203Q969S6 136 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 PITX2Q99697 317 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 BOCQ9BWV1 1114 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ACPTQ9BZG2 426 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ZYG11BQ9C0D3 744 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 MKRN2Q9H000 416 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 MROH8Q9H579 483 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF408Q9H9D4 720 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 AFF4Q9UHB7 1163 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 CLEC2DQ9UHP7 191 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 TMPRSS11EQ9UL52 423 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ARIH1Q9Y4X5 557 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 PTCH2Q9Y6C5 1203 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 B4DXG7 233 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 J3KTA2 159 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 RAMP2O60895 175 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 AOC2O75106 756 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 SNX4O95219 450 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 MMP3P08254 477 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 CYP2A6P11509 494 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 CCL23P55773 120 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 RPS14P62263 151 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 UBE3AQ05086 875 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 NFE2Q16621 373 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 UAP1L1Q3KQV9 507 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 PRAMEF19Q5SWL8 479 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 FAHD1Q6P587 224 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ATCAYQ86WG3 371 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 AMIGO1Q86WK6 493 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ZSWIM9Q86XI8 627 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 FCGR1BQ92637 280 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ULK4Q96C45 1275 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 CSNK1G1Q9HCP0 422 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ABCC13Q9NSE7 274 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 NLE1Q9NVX2 485 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 WWOXQ9NZC7 414 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 DUSP12Q9UNI6 340 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ITM2BQ9Y287 266 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 TRIP12Q14669 1992 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-202ENST00000460593 FAM25AB3EWG3 89 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 FAM25CB3EWG5 89 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 FAM25GB3EWG6 89 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 FAM227AF5H4B4 570 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 CLIC1O00299 241 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 KCNK5O95279 499 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 SDHBP21912 280 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 FEN1P39748 380 aaKnown RBP11.33□□□□□ -0.6
CPSF3-202ENST00000460593 KIR2DL3P43628 341 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 CRYBA2P53672 197 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 POU6F2P78424 691 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-202ENST00000460593 VEPH1Q14D04 833 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 INO80DQ53TQ3 878 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-202ENST00000460593 XKR4Q5GH76 650 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 PTOV1Q86YD1 416 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 ZZZ3Q8IYH5 903 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 OR6J1Q8NGC5 347 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 TRIM63Q969Q1 353 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 APOLD1Q96LR9 279 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 COL21A1Q96P44 957 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 IL4I1Q96RQ9 567 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 TNS1Q9HBL0 1735 aaKnown RBP11.33□□□□□ -0.6
CPSF3-202ENST00000460593 GRIP1Q9Y3R0 1128 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 HSPB11Q9Y547 144 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 RFXAPO00287 272 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 IFRD1O00458 451 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-202ENST00000460593 PRAMEF12O95522 483 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 PDYNP01213 254 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 C9P02748 559 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 HLA-DPA1P20036 260 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 GGT2P36268 569 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 CAV3P56539 151 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 ABHD18Q0P651 414 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 VMACQ2NL98 169 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 TJAP1Q5JTD0 557 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 PAQR6Q6TCH4 344 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 AFTPHQ6ULP2 937 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.33□□□□□ -0.6
CPSF3-202ENST00000460593 ST13P5Q8NFI4 369 aaPredicted RBP11.33□□□□□ -0.6
CPSF3-202ENST00000460593 GRPEL2Q8TAA5 225 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 PANX1Q96RD7 426 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 KCNH6Q9H252 994 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 PRM3Q9NNZ6 103 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 ZSWIM8A7E2V4 1837 aa11.33□□□□□ -0.6
CPSF3-202ENST00000460593 FZD9O00144 591 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 MANBAO00462 879 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 YY2O15391 372 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 WDR47O94967 919 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 LIMK1P53667 647 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CDH12P55289 794 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 FAPQ12884 760 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 CDONQ4KMG0 1287 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.32□□□□□ -0.6
CPSF3-202ENST00000460593 AGMOQ6ZNB7 445 aa11.32□□□□□ -0.6
CPSF3-202ENST00000460593 TSEN54Q7Z6J9 526 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms