RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 RNF112Q9ULX5 631 aa15.65■□□□□ 0.1
SF3A1-204ENST00000447376 KCNE2Q9Y6J6 123 aa15.65■□□□□ 0.1
SF3A1-204ENST00000447376 SNRNP200O75643 2136 aaKnown RBP15.65■□□□□ 0.1
SF3A1-204ENST00000447376 LOC105369274A0A096LPK9 316 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 IGKV1-8A0A0C4DH67 115 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 LOC102723532A0A0G2JNH3 316 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 HMX2A2RU54 273 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 NCF1BA6NI72 391 aaPredicted RBP15.64■□□□□ 0.09
SF3A1-204ENST00000447376 NCF1CA8MVU1 366 aaPredicted RBP15.64■□□□□ 0.09
SF3A1-204ENST00000447376 TRIM49D1C9J1S8 452 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 CDH1P12830 882 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 NCF1P14598 390 aaPredicted RBP15.64■□□□□ 0.09
SF3A1-204ENST00000447376 CD1DP15813 335 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 ITGAXP20702 1163 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 CCR8P51685 355 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 EMP3P54852 163 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 RPS18P62269 152 aaKnown RBP15.64■□□□□ 0.09
SF3A1-204ENST00000447376 YBX1P67809 324 aaKnown RBP15.64■□□□□ 0.09
SF3A1-204ENST00000447376 SLC9A5Q14940 896 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 PPP1R3AQ16821 1122 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 GARNL3Q5VVW2 1013 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 FBXO42Q6P3S6 717 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 GPSM1Q86YR5 675 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 OR4N4Q8N0Y3 316 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 STAG3L4Q8TBR4 150 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 FKBP10Q96AY3 582 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 VPS50Q96JG6 964 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 IP6K3Q96PC2 410 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 VPS11Q9H270 941 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 ADNPQ9H2P0 1102 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 EPB41L4BQ9H329 900 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 ENAMQ9NRM1 1142 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 WWOXQ9NZC7 414 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 CD274Q9NZQ7 290 aa15.64■□□□□ 0.09
SF3A1-204ENST00000447376 NXT1Q9UKK6 140 aaKnown RBP15.64■□□□□ 0.09
SF3A1-204ENST00000447376 G3BP2Q9UN86 482 aaKnown RBP15.64■□□□□ 0.09
SF3A1-204ENST00000447376 ERLIN1O75477 346 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 IPO13O94829 963 aaKnown RBP15.63■□□□□ 0.09
SF3A1-204ENST00000447376 ALDOAP04075 364 aaKnown RBP15.63■□□□□ 0.09
SF3A1-204ENST00000447376 CTSBP07858 339 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 SLC35G6P0C7Q6 338 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 NPPBP16860 134 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 OCA2Q04671 838 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 IFFO1Q0D2I5 559 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 TGFBIQ15582 683 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 SOWAHCQ53LP3 525 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-204ENST00000447376 CDKL4Q5MAI5 379 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 ATP1A1-AS1Q5TC04 95 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 ZNF385CQ66K41 422 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-204ENST00000447376 LCN10Q6JVE6 187 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 THOC6Q86W42 341 aaKnown RBP15.63■□□□□ 0.09
SF3A1-204ENST00000447376 SPATA6LQ8N4H0 392 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 CAMKVQ8NCB2 501 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 ISL2Q96A47 359 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 KIAA1191Q96A73 305 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 COL26A1Q96A83 441 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 MVB12AQ96EY5 273 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 RUFY1Q96T51 708 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 CAPS2Q9BXY5 557 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 ZNF304Q9HCX3 659 aa15.63■□□□□ 0.09
SF3A1-204ENST00000447376 PTRH2Q9Y3E5 179 aaKnown RBP15.63■□□□□ 0.09
SF3A1-204ENST00000447376 SYCE1LA8MT33 242 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 NRP2O60462 931 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 WDR47O94967 919 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 KLHL2O95198 593 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 IGHEP01854 428 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 ALBP02768 609 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 COL6A2P12110 1019 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 TFEBP19484 476 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 FBLP22087 321 aaKnown RBP15.62■□□□□ 0.09
SF3A1-204ENST00000447376 AVPR1BP47901 424 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 RRADP55042 308 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 POLE2P56282 527 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 SKP1P63208 163 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 LY6DQ14210 128 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 SSPNQ14714 243 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 ACAP2Q15057 778 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 SULT1C3Q6IMI6 304 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 TIFABQ6ZNK6 161 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 PLD3Q8IV08 490 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 MREGQ8N565 214 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 SLC5A11Q8WWX8 675 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 OR2A5Q96R48 311 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 UNKQ9C0B0 810 aaKnown RBP15.62■□□□□ 0.09
SF3A1-204ENST00000447376 WDR54Q9H977 334 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 TUBD1Q9UJT1 453 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 IKZF3Q9UKT9 509 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 ZFYVE26Q68DK2 2539 aa15.62■□□□□ 0.09
SF3A1-204ENST00000447376 KCNE1BA0A087WTH5 132 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 MKRN2OSH3BPM6 223 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 PEX12O00623 359 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 CDH16O75309 829 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 H2AFYO75367 372 aaKnown RBP15.61■□□□□ 0.09
SF3A1-204ENST00000447376 RFPL1O75677 317 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 SHBGP04278 402 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 NUDT17P0C025 328 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 FAM87AP0C7U9 286 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 GNAZP19086 355 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 CXCR2P25025 360 aa15.61■□□□□ 0.09
SF3A1-204ENST00000447376 GCAP28676 217 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms