RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 FIGLAQ6QHK4 219 aa16.53■□□□□ 0.24
LIME1-202ENST00000444951 WDR48Q8TAF3 677 aa16.53■□□□□ 0.24
LIME1-202ENST00000444951 ZNF483Q8TF39 744 aaPredicted RBP16.53■□□□□ 0.24
LIME1-202ENST00000444951 PRAP1Q96NZ9 151 aa16.53■□□□□ 0.24
LIME1-202ENST00000444951 DPYSL5Q9BPU6 564 aa16.53■□□□□ 0.24
LIME1-202ENST00000444951 SHCBP1LQ9BZQ2 653 aa16.53■□□□□ 0.24
LIME1-202ENST00000444951 PRM3Q9NNZ6 103 aa16.53■□□□□ 0.24
LIME1-202ENST00000444951 INTS9Q9NV88 658 aaKnown RBP16.53■□□□□ 0.24
LIME1-202ENST00000444951 PCDHGA8Q9Y5G5 932 aa16.53■□□□□ 0.24
LIME1-202ENST00000444951 AHCTF1Q8WYP5 2266 aa16.53■□□□□ 0.24
LIME1-202ENST00000444951 PPP6CO00743 305 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 FGF3P11487 239 aaPredicted RBP16.52■□□□□ 0.24
LIME1-202ENST00000444951 GNAZP19086 355 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 EPORP19235 508 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 PIK3CGP48736 1102 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 CCNG1P51959 295 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 TMPRSS3P57727 454 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 ABATP80404 500 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 IRF8Q02556 426 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 CLCQ05315 142 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 C19orf57Q0VDD7 668 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 CHIT1Q13231 466 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 PLD3Q8IV08 490 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 TRAPPC9Q96Q05 1148 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 CDK15Q96Q40 435 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 CD180Q99467 661 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 CAPS2Q9BXY5 557 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 SEMA4CQ9C0C4 833 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 TWSG1Q9GZX9 223 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 GSTO2Q9H4Y5 243 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 ACTR8Q9H981 624 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 C1GALT1Q9NS00 363 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 SSUH2Q9Y2M2 353 aa16.52■□□□□ 0.24
LIME1-202ENST00000444951 COL6A6A6NMZ7 2263 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 IGKV1-8A0A0C4DH67 115 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 FEZF1A0PJY2 475 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 OR7A17O14581 309 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 THRAP10827 490 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 RBMS1P29558 406 aaKnown RBP16.51■□□□□ 0.23
LIME1-202ENST00000444951 MLLT3P42568 568 aaPredicted RBP16.51■□□□□ 0.23
LIME1-202ENST00000444951 CCR8P51685 355 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 INHBCP55103 352 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 KCNAB1Q14722 419 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 ZIC1Q15915 447 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 CLPPQ16740 277 aaPredicted RBP16.51■□□□□ 0.23
LIME1-202ENST00000444951 BROXQ5VW32 411 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 FCRL6Q6DN72 434 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 NXPE4Q6UWF7 544 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 SLITRK4Q8IW52 837 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 ARFGAP2Q8N6H7 521 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 C19orf47Q8N9M1 422 aaKnown RBP16.51■□□□□ 0.23
LIME1-202ENST00000444951 LSM14AQ8ND56 463 aaKnown RBP16.51■□□□□ 0.23
LIME1-202ENST00000444951 OR52B6Q8NGF0 335 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 C1QTNF3Q9BXJ4 246 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 ZBTB26Q9HCK0 441 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 GPRC5BQ9NZH0 403 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 SNX7Q9UNH6 387 aa16.51■□□□□ 0.23
LIME1-202ENST00000444951 PCM1Q15154 2024 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 CCDC187A0A096LP49 1063 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 HAT1O14929 419 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 MAP3K7O43318 606 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 PRAMEF4O60810 478 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 H2AFYO75367 372 aaKnown RBP16.5■□□□□ 0.23
LIME1-202ENST00000444951 TNFSF15O95150 251 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 ZBTB11O95625 1053 aaPredicted RBP16.5■□□□□ 0.23
LIME1-202ENST00000444951 C1GALT1C1LP0DN25 315 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 DOC2AQ14183 400 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 SLBPQ14493 270 aaKnown RBP eCLIP16.5■□□□□ 0.23
LIME1-202ENST00000444951 DEFB110Q30KQ9 67 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 PRAMEF9Q5VWM5 478 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 FAM219BQ5XKK7 198 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 METTL2BQ6P1Q9 378 aaKnown RBP16.5■□□□□ 0.23
LIME1-202ENST00000444951 SLCO4C1Q6ZQN7 724 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 FRMD7Q6ZUT3 714 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 PRSS42Q7Z5A4 293 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 FAM129CQ86XR2 697 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 WDR36Q8NI36 951 aaKnown RBP16.5■□□□□ 0.23
LIME1-202ENST00000444951 FAM76AQ8TAV0 307 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 GRAMD1AQ96CP6 724 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 TMEM74Q96NL1 305 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 PLCD4Q9BRC7 762 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 DPH1Q9BZG8 443 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 PELI2Q9HAT8 420 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 MID1IP1Q9NPA3 183 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 TMEM184CQ9NVA4 438 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 RNF11Q9Y3C5 154 aa16.5■□□□□ 0.23
LIME1-202ENST00000444951 SETXQ7Z333 2677 aaKnown RBP16.49■□□□□ 0.23
LIME1-202ENST00000444951 A0A0J9YVX5 310 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 A0A1B0GTL3 188 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 ERVH48-1M5A8F1 160 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 LYPLA1O75608 230 aaPredicted RBP16.49■□□□□ 0.23
LIME1-202ENST00000444951 FKBP9O95302 570 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 STATHP02808 62 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 SERPINE1P05121 402 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 HGFP14210 728 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 CSNK1G2P78368 415 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 HSD11B2P80365 405 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 LCP2Q13094 533 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 STX3Q13277 289 aa16.49■□□□□ 0.23
LIME1-202ENST00000444951 CLN3Q13286 438 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms