RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, human

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-208	ENST00000443046	CXXC4	Q9H2H0	198 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	MRPS30	Q9NP92	439 aa	Known RBP	13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	TFR2	Q9UP52	801 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	RUVBL2	Q9Y230	463 aa	Known RBP	13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	R3HDM2	Q9Y2K5	976 aa	Known RBP	13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	AKAP6	Q13023	2319 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	SYCE3	A1L190	88 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	CDK2AP1	O14519	115 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	TXNDC9	O14530	226 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	KPNA5	O15131	536 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	P2RX6	O15547	441 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	SUN1	O94901	812 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	TSPAN12	O95859	305 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	PKM	P14618	531 aa	Known RBP	13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	CD46	P15529	392 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	RPS3	P23396	243 aa	Known RBP eCLIP	13.58	□□□□□ -0.24	1e-8	■□□□□ 8.7
HMGN1-208	ENST00000443046	ADRA1D	P25100	572 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	PRDX1	Q06830	199 aa	Known RBP	13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	C3P1	Q6ZMU1	363 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	GALNTL5	Q7Z4T8	443 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	PCGF5	Q86SE9	256 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	MARVELD2	Q8N4S9	558 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	OR6P1	Q8NGX9	317 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	MAGEC3	Q8TD91	643 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	ALG3	Q92685	438 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	PEX13	Q92968	403 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	MRFAP1L1	Q96HT8	127 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	PANX3	Q96QZ0	392 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	ACAT2	Q9BWD1	397 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	MMP25	Q9NPA2	562 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	ANKRD10	Q9NXR5	420 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	MARCH4	Q9P2E8	410 aa	Predicted RBP	13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	HRH3	Q9Y5N1	445 aa		13.58	□□□□□ -0.24
HMGN1-208	ENST00000443046	SOWAHD	A6NJG2	315 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	ERI2	A8K979	691 aa	Known RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046		H0YIG0	161 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	PRRG2	O14669	202 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	NADK	O95544	446 aa	Predicted RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	EZR	P15311	586 aa	Known RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	DNAJA1	P31689	397 aa	Known RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	GRIA1	P42261	906 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	ST13	P50502	369 aa	Known RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	RWDD2B	P57060	319 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	EXT1	Q16394	746 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	AARS2	Q5JTZ9	985 aa	Known RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	SLC25A25	Q6KCM7	469 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	SUSD1	Q6UWL2	747 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	ANKRD37	Q7Z713	158 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	DMRTC2	Q8IXT2	367 aa	Predicted RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	MMP21	Q8N119	569 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	LGI4	Q8N135	537 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	EID3	Q8N140	333 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	DNAAF3	Q8N9W5	541 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	OR9A1P	Q8NGU1	263 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	GSDMB	Q8TAX9	411 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	SMPDL3A	Q92484	453 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	OLFM1	Q99784	485 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	KCNK13	Q9HB14	408 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	COQ3	Q9NZJ6	369 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	C19orf25	Q9UFG5	118 aa	Predicted RBP	13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	PPT2	Q9UMR5	302 aa		13.57	□□□□□ -0.24
HMGN1-208	ENST00000443046	NSD1	Q96L73	2696 aa	Predicted RBP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	OR2W5	A6NFC9	320 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	GABRR3	A8MPY1	467 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	FOXO6	A8MYZ6	492 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	MYO1C	O00159	1063 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	TOX	O94900	526 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	NSA2	O95478	260 aa	Known RBP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	ATP5D	P30049	168 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	TTPA	P49638	278 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	KLF1	Q13351	362 aa	Predicted RBP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	PTK6	Q13882	451 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	ARHGAP19	Q14CB8	494 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	ANKRD20A4	Q4UJ75	823 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	ICE2	Q659A1	982 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	PTRHD1	Q6GMV3	140 aa	Known RBP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	OTOA	Q7RTW8	1153 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	ZNF227	Q86WZ6	799 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	LRRC6	Q86X45	466 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	TGIF2LY	Q8IUE0	185 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	HORMAD2	Q8N7B1	307 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	FAM98A	Q8NCA5	519 aa	Known RBP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	OR9A4	Q8NGU2	314 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	LILRB4	Q8NHJ6	448 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	SLC35B2	Q8TB61	432 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	FAM57A	Q8TBR7	257 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	SKA2	Q8WVK7	121 aa	Predicted RBP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	RERG	Q96A58	199 aa	Predicted RBP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	FOPNL	Q96NB1	174 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	FOXC2	Q99958	501 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	TRIM45	Q9H8W5	580 aa	Predicted RBP	13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	CATSPERZ	Q9NTU4	200 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	GNPTG	Q9UJJ9	305 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	TCAF1	Q9Y4C2	921 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	SCN3A	Q9NY46	2000 aa		13.56	□□□□□ -0.24
HMGN1-208	ENST00000443046	ARHGEF33	A8MVX0	844 aa		13.55	□□□□□ -0.24

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