RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 COQ7Q99807 217 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TTLL2Q9BWV7 592 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 ASPNQ9BXN1 380 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 C11orf54Q9H0W9 315 aaPredicted RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 TSR3Q9UJK0 312 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 E5RI56 91 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 MANBAO00462 879 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 RFXANKO14593 260 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 GPR182O15218 404 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 ACVRL1P37023 503 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 GDF5P43026 501 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 CRYBA2P53672 197 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 AP2S1P53680 142 aaPredicted RBP10.36□□□□□ -0.75
USP54-204ENST00000422491 MED22Q15528 200 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TRIM60Q495X7 471 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 GLYR1Q49A26 553 aaPredicted RBP10.36□□□□□ -0.75
USP54-204ENST00000422491 TIGD5Q53EQ6 642 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 ZNF772Q68DY9 489 aaPredicted RBP10.36□□□□□ -0.75
USP54-204ENST00000422491 TIGD3Q6B0B8 471 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 ALG1LQ6GMV1 187 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 RGMBQ6NW40 437 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 GPR155Q7Z3F1 870 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 LRRTM3Q86VH5 581 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 NLRP8Q86W28 1048 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 CPA6Q8N4T0 437 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 EFHBQ8N7U6 833 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 YIPF7Q8N8F6 280 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 B3GNT7Q8NFL0 401 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 IGSF8Q969P0 613 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 FRMD6Q96NE9 622 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 SMIM14Q96QK8 99 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 CCM2Q9BSQ5 444 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 BBS2Q9BXC9 721 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 PRRG3Q9BZD7 231 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 RNF121Q9H920 327 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 DIABLOQ9NR28 239 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 SPEF1Q9Y4P9 236 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TTC3P53804 2025 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 PTPRDP23468 1912 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TNFRSF10BO14763 440 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TLR5O60602 858 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 RAMP2O60895 175 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 GLUD1P00367 558 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 HLA-DMAP28067 261 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 MC4RP32245 332 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 IL12RB1P42701 662 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TUFMP49411 452 aaKnown RBP10.36□□□□□ -0.75
USP54-204ENST00000422491 KCNJ10P78508 379 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 CSTF3Q12996 717 aaKnown RBP10.36□□□□□ -0.75
USP54-204ENST00000422491 ZNF235Q14590 738 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 SLC35F1Q5T1Q4 408 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 ERICH5Q6P6B1 374 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 DPY19L3Q6ZPD9 716 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TSEN54Q7Z6J9 526 aaKnown RBP10.36□□□□□ -0.75
USP54-204ENST00000422491 KRT73Q86Y46 540 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TRIM48Q8IWZ4 208 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 OR10T2Q8NGX3 314 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 CHTF18Q8WVB6 975 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 DNAJB3Q8WWF6 145 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 DEDD2Q8WXF8 326 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 NACC2Q96BF6 587 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TESCQ96BS2 214 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 VPS35Q96QK1 796 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 ACBD6Q9BR61 282 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 ACPTQ9BZG2 426 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 KATNBL1Q9H079 304 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 NARFLQ9H6Q4 476 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 MS4A12Q9NXJ0 267 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 FKBPLQ9UIM3 349 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 KLHL21Q9UJP4 597 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 TLR6Q9Y2C9 796 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 PCDHGB3Q9Y5G1 929 aa10.36□□□□□ -0.75
USP54-204ENST00000422491 A0A0G2JLL6 359 aaPredicted RBP10.35□□□□□ -0.75
USP54-204ENST00000422491 A0A1W2PQH9 124 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 MBLAC1A4D2B0 266 aaPredicted RBP10.35□□□□□ -0.75
USP54-204ENST00000422491 H3BM21 787 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 M0R129 80 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 MEN1O00255 615 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 CLIC1O00299 241 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 PRAMEF11O60813 436 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 GUCA1CO95843 209 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 CSF3P09919 207 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 GPX2P18283 190 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 CBLP22681 906 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 TACR1P25103 407 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 KCNQ1P51787 676 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 ESCO2Q56NI9 601 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 PRRT2Q7Z6L0 340 aaPredicted RBP10.35□□□□□ -0.75
USP54-204ENST00000422491 OPALINQ96PE5 141 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 DPH2Q9BQC3 489 aaPredicted RBP10.35□□□□□ -0.75
USP54-204ENST00000422491 PAAF1Q9BRP4 392 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 CNPPD1Q9BV87 410 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 MROH8Q9H579 483 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 NIPAL2Q9H841 368 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 PDFQ9HBH1 243 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 HHATLQ9HCP6 504 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 RLIMQ9NVW2 624 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 TRPS1Q9UHF7 1281 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 SLC6A14Q9UN76 642 aa10.35□□□□□ -0.75
USP54-204ENST00000422491 DHRS7Q9Y394 339 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms