RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SH3GL1Q99961 368 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 THUMPD1Q9NXG2 353 aaKnown RBP9.54□□□□□ -0.88
SS18-203ENST00000415083 ZNF226Q9NYT6 803 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 TRPM5Q9NZQ8 1165 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 ERVW-1Q9UQF0 538 aa9.54□□□□□ -0.88
SS18-203ENST00000415083 GABRR3A8MPY1 467 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 ZBBXA8MT70 800 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 MYO1GB0I1T2 1018 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 H7C4K7 107 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 PCDH7O60245 1069 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SH3BGRLO75368 114 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 ARHGEF15O94989 841 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 KCNK2O95069 426 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SRCP12931 536 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 FPR1P21462 350 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 CD40LGP29965 261 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 DNAJA1P31689 397 aaKnown RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 EIF2DP41214 584 aaKnown RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 TM4SF4P48230 202 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 IL1RL1Q01638 556 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 BCL2L1Q07817 233 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 HSPA14Q0VDF9 509 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 NPRL3Q12980 569 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 MAPK11Q15759 364 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SYT16Q17RD7 645 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 EIF3MQ7L2H7 374 aaKnown RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 DNAJB7Q7Z6W7 309 aaPredicted RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 P2RY8Q86VZ1 359 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 OR4C15Q8NGM1 316 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 GLMNQ92990 594 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SH3KBP1Q96B97 665 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 ULK4Q96C45 1275 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SCLYQ96I15 445 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 KCNC2Q96PR1 638 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SPATA6Q9NWH7 488 aaPredicted RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 ZDHHC3Q9NYG2 299 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 TAS2R16Q9NYV7 291 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 PPIL1Q9Y3C6 166 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 GMPPBQ9Y5P6 360 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SLC22A1O15245 554 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 RECQL5O94762 991 aaPredicted RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 FABP3P05413 133 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 ANXA5P08758 320 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 GSSP48637 474 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SLC13A2Q13183 592 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 CYP27C1Q4G0S4 372 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 AGAP7PQ5VUJ5 663 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 AHSA2Q719I0 299 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 PRSS48Q7RTY5 328 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 LRRC70Q7Z2Q7 622 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 ZNF540Q8NDQ6 660 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 ZNF461Q8TAF7 563 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 MTERF1Q99551 399 aaKnown RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 NIPSNAP1Q9BPW8 284 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 GABARAPL3Q9BY60 117 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 AMBNQ9NP70 447 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 KCTD5Q9NXV2 234 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 GULP1Q9UBP9 304 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SNX5Q9Y5X3 404 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 BACE2Q9Y5Z0 518 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 NUAK1O60285 661 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 GMNNO75496 209 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 PRPS2P11908 318 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SELPP16109 830 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 PSMB9P28065 219 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 AQP1P29972 269 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 NSG1P42857 185 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 C1QTNF12Q5T7M4 302 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 KIAA1614Q5VZ46 1190 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 FRG2Q64ET8 278 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 GAREM2Q75VX8 874 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 TSPYL5Q86VY4 417 aaPredicted RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 NAGSQ8N159 534 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 CHST14Q8NCH0 376 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 OR8J2Q8NGG1 315 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 RORBQ92753 470 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SCRN2Q96FV2 425 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 HRASLS5Q96KN8 279 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 FRG2BQ96QU4 278 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 MCCC1Q96RQ3 725 aaPredicted RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 SMG9Q9H0W8 520 aaKnown RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 DSN1Q9H410 356 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 NDUFAF4Q9P032 175 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 SAMD4AQ9UPU9 718 aaKnown RBP9.53□□□□□ -0.88
SS18-203ENST00000415083 NOTCH4Q99466 2003 aa9.53□□□□□ -0.88
SS18-203ENST00000415083 J3KTA2 159 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 SSX4O60224 188 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 KRT6AP02538 564 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 KRT6BP04259 564 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 KRT6CP48668 564 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 CSNK1DP48730 415 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 TUFMP49411 452 aaKnown RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 CYP4F8P98187 520 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 FADDQ13158 208 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 GPR33Q49SQ1 333 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 PLEKHG7Q6ZR37 379 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 SLC22A16Q86VW1 577 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 LSRQ86X29 649 aaPredicted RBP9.52□□□□□ -0.89
SS18-203ENST00000415083 LYSMD2Q8IV50 215 aa9.52□□□□□ -0.89
SS18-203ENST00000415083 RHOXF1Q8NHV9 184 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms