RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PRMT9Q6P2P2 845 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 KIRREL2Q6UWL6 708 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 LCTLQ6UWM7 567 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 PALM2Q8IXS6 379 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 TEX19Q8NA77 164 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 FBXL8Q96CD0 374 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 VPS39Q96JC1 886 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 UNKQ9C0B0 810 aaKnown RBP18.13■□□□□ 0.49
SF3A1-202ENST00000411423 SPNS1Q9H2V7 528 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 RHOJQ9H4E5 214 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 ARL15Q9NXU5 204 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 CDC23Q9UJX2 597 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 FBXL4Q9UKA2 621 aa18.13■□□□□ 0.49
SF3A1-202ENST00000411423 IGLV3-12A0A075B6K2 115 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 A0A0A6YYC8 382 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 CTAGE15A4D2H0 777 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 FAM159BA6NKW6 160 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 I3L1I5 382 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 AGPSO00116 658 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 ZGLP1P0C6A0 271 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 FBLP22087 321 aaKnown RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 SLC26A3P40879 764 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 CD97P48960 835 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 RRADP55042 308 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 MLLT10P55197 1068 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 MEF2AQ02078 507 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 UBAP2Q5T6F2 1119 aaKnown RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 CTAGE6Q86UF2 777 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 RBMXL3Q8N7X1 1067 aaKnown RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 RERGQ96A58 199 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 SMAD5Q99717 465 aaKnown RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 LRRC1Q9BTT6 524 aa18.12■□□□□ 0.49
SF3A1-202ENST00000411423 ZBTB20Q9HC78 741 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-202ENST00000411423 UBR5O95071 2799 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 NDC80O14777 642 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 FAM155BO75949 473 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 HIST1H2AGP0C0S8 130 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 HIST1H2ADP20671 130 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 CSRP3P50461 194 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 FOXK1P85037 733 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 MAT1AQ00266 395 aaKnown RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 Q0VFX4 171 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 C18orf21Q32NC0 220 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 CATSPEREQ5SY80 951 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 C17orf64Q86WR6 236 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 GALNT16Q8N428 558 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 SPATA6LQ8N4H0 392 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 TM4SF19Q96DZ7 209 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 MMABQ96EY8 250 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 HIST1H2AHQ96KK5 128 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 FER1L6-AS2Q96M78 137 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 IP6K3Q96PC2 410 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 HIST1H2AJQ99878 128 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 H2AFJQ9BTM1 129 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 ZNF552Q9H707 407 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 LRRC4CQ9HCJ2 640 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 GPR83Q9NYM4 423 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 LUZP4Q9P127 313 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 ZNF282Q9UDV7 671 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 NOVA2Q9UNW9 492 aaKnown RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 PLAAQ9Y263 795 aa18.11■□□□□ 0.49
SF3A1-202ENST00000411423 UTP11Q9Y3A2 253 aaKnown RBP18.11■□□□□ 0.49
SF3A1-202ENST00000411423 KCNE1BA0A087WTH5 132 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 PEX12O00623 359 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 AP1S2P56377 157 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 RPS15AP62244 130 aaKnown RBP18.1■□□□□ 0.49
SF3A1-202ENST00000411423 DSG2Q14126 1118 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 EFTUD2Q15029 972 aaKnown RBP eCLIP18.1■□□□□ 0.498e-7■■■■□ 22.9
SF3A1-202ENST00000411423 TSNQ15631 228 aaKnown RBP18.1■□□□□ 0.49
SF3A1-202ENST00000411423 GARNL3Q5VVW2 1013 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 CAPN13Q6MZZ7 669 aaPredicted RBP18.1■□□□□ 0.49
SF3A1-202ENST00000411423 C3orf62Q6ZUJ4 267 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 Q8NA96 180 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 KCT2Q8NC54 265 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 ZNF740Q8NDX6 193 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 OR11G2Q8NGC1 345 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 OR4K1Q8NGD4 311 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 OR9A4Q8NGU2 314 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 MIEF2Q96C03 454 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 C8orf44Q96CB5 159 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 MOCOSQ96EN8 888 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 CRB3Q9BUF7 120 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 MFRPQ9BY79 579 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 PCBD2Q9H0N5 130 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 ZDHHC18Q9NUE0 388 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 NXT1Q9UKK6 140 aaKnown RBP18.1■□□□□ 0.49
SF3A1-202ENST00000411423 ZNF451Q9Y4E5 1061 aa18.1■□□□□ 0.49
SF3A1-202ENST00000411423 PHGDHO43175 533 aaKnown RBP18.09■□□□□ 0.49
SF3A1-202ENST00000411423 URI1O94763 535 aaPredicted RBP18.09■□□□□ 0.49
SF3A1-202ENST00000411423 SORBS2O94875 1100 aaKnown RBP18.09■□□□□ 0.49
SF3A1-202ENST00000411423 ENO2P09104 434 aaPredicted RBP18.09■□□□□ 0.49
SF3A1-202ENST00000411423 HRH2P25021 359 aa18.09■□□□□ 0.49
SF3A1-202ENST00000411423 MAGEA4P43358 317 aa18.09■□□□□ 0.49
SF3A1-202ENST00000411423 SOX8P57073 446 aa18.09■□□□□ 0.49
SF3A1-202ENST00000411423 GUCY2DQ02846 1103 aa18.09■□□□□ 0.49
SF3A1-202ENST00000411423 KCNC4Q03721 635 aa18.09■□□□□ 0.49
SF3A1-202ENST00000411423 MYBPC3Q14896 1274 aa18.09■□□□□ 0.49
SF3A1-202ENST00000411423 KBTBD12Q3ZCT8 623 aa18.09■□□□□ 0.49
SF3A1-202ENST00000411423 PRR30Q53SZ7 412 aaPredicted RBP18.09■□□□□ 0.49
SF3A1-202ENST00000411423 TMEM214Q6NUQ4 689 aaKnown RBP18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms