RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 PDZD3Q86UT5 571 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 AMZ2Q86W34 360 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 MMAAQ8IVH4 418 aaKnown RBP13.11□□□□□ -0.31
LIMS1-205ENST00000410093 DCUN1D3Q8IWE4 304 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 MSRB3Q8IXL7 192 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 RAB42Q8N4Z0 105 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 DHRSXQ8N5I4 330 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 FAM162AQ96A26 154 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 TSSK3Q96PN8 268 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 OR4K3Q96R72 315 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 ADI1Q9BV57 179 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 RSPH9Q9H1X1 276 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-205ENST00000410093 RMI1Q9H9A7 625 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 CLK4Q9HAZ1 481 aaKnown RBP13.11□□□□□ -0.31
LIMS1-205ENST00000410093 CCDC177Q9NQR7 707 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-205ENST00000410093 GULP1Q9UBP9 304 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 RPS6KA6Q9UK32 745 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 ACSL5Q9ULC5 683 aa13.11□□□□□ -0.31
LIMS1-205ENST00000410093 CKAP5Q14008 2032 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 ARHGAP10A1A4S6 786 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 SAC3D1A6NKF1 404 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 H3BNH8 94 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 SCAMP2O15127 329 aaKnown RBP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 AHCYL1O43865 530 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 CREG1O75629 220 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 FESP07332 822 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 ABCB1P08183 1280 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 SMIM18P0DKX4 95 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 COX7A2P14406 83 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 NPPBP16860 134 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 GPX2P18283 190 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 CD22P20273 847 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 TIA1P31483 386 aaKnown RBP eCLIP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 IL12RB1P42701 662 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 BDKRB1P46663 353 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 GZMMP51124 257 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 ALDH3A2P51648 485 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 TBPL1P62380 186 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 YBX1P67809 324 aaKnown RBP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 CAMK2GQ13555 558 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 VEZF1Q14119 521 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 ITPRIPL2Q3MIP1 535 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 PIP5KL1Q5T9C9 394 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 RNF220Q5VTB9 566 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 TANGO2Q6ICL3 276 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 TRMT11Q7Z4G4 463 aaKnown RBP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 LRRTM4Q86VH4 590 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 KRT78Q8N1N4 520 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 SLC5A11Q8WWX8 675 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 FIG4Q92562 907 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 COQ8BQ96D53 544 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 DGCR14Q96DF8 476 aaKnown RBP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 RMND5BQ96G75 393 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 ZFYVE19Q96K21 471 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 LRFN3Q9BTN0 628 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 BHLHE41Q9C0J9 482 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-205ENST00000410093 AHSPQ9NZD4 102 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 SPATA7Q9P0W8 599 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 LIMD1Q9UGP4 676 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 MUTYHQ9UIF7 546 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 HCN4Q9Y3Q4 1203 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 BDP1A6H8Y1 2624 aa13.1□□□□□ -0.31
LIMS1-205ENST00000410093 FAM86C2PA6NEL3 165 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 OTOL1A6NHN0 477 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-205ENST00000410093 FPGTO14772 594 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 KMOO15229 486 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 ZNF8P17098 575 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-205ENST00000410093 PDHA2P29803 388 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 PBLDP30039 288 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-205ENST00000410093 CAPGP40121 348 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 RPS6KA3P51812 740 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 PHC1P78364 1004 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 CTBSQ01459 385 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 DMPKQ09013 629 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 CNTN1Q12860 1018 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 RFX4Q33E94 735 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 CPTPQ5TA50 214 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 CPZQ66K79 652 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 NXPE4Q6UWF7 544 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 GCNT7Q6ZNI0 430 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 IKBIPQ70UQ0 350 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 PATL1Q86TB9 770 aaKnown RBP13.09□□□□□ -0.31
LIMS1-205ENST00000410093 ZDHHC13Q8IUH4 622 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 EPHX4Q8IUS5 362 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 HUS1BQ8NHY5 278 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 PNPT1Q8TCS8 783 aaKnown RBP13.09□□□□□ -0.31
LIMS1-205ENST00000410093 SLC47A1Q96FL8 570 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 AURKBQ96GD4 344 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-205ENST00000410093 PANX1Q96RD7 426 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 SEPHS2Q99611 448 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 C1QTNF7Q9BXJ2 289 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 TEX101Q9BY14 249 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 REXO4Q9GZR2 422 aaKnown RBP13.09□□□□□ -0.31
LIMS1-205ENST00000410093 OR52A5Q9H2C5 316 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 NT5DC2Q9H857 520 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 PELI2Q9HAT8 420 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 USE1Q9NZ43 259 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 ZNF282Q9UDV7 671 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-205ENST00000410093 ATP6V1HQ9UI12 483 aa13.09□□□□□ -0.31
LIMS1-205ENST00000410093 COQ6Q9Y2Z9 468 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms