RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ANGPTL2Q9UKU9 493 aa28.1■■■□□ 2.09
USP42-202ENST00000404008 PCDHGA3Q9Y5H0 932 aa28.1■■■□□ 2.09
USP42-202ENST00000404008 FREM2Q5SZK8 3169 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 FEZF1A0PJY2 475 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 H3BMH7 237 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 CTSBP07858 339 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 CASP2P42575 452 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 RPS15AP62244 130 aaKnown RBP28.09■■■□□ 2.09
USP42-202ENST00000404008 CYP4F3Q08477 520 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 DOC2AQ14183 400 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 TBCCQ15814 346 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 LIPMQ5VYY2 423 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 CEACAM20Q6UY09 585 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 PPP1R3BQ86XI6 285 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 ZNF740Q8NDX6 193 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 PTCD3Q96EY7 689 aaKnown RBP28.09■■■□□ 2.09
USP42-202ENST00000404008 OR2A5Q96R48 311 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 SELENOSQ9BQE4 189 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 AIF1LQ9BQI0 150 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 ASPSCR1Q9BZE9 553 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 NOL11Q9H8H0 719 aaKnown RBP28.09■■■□□ 2.09
USP42-202ENST00000404008 ACSS2Q9NR19 701 aa28.09■■■□□ 2.09
USP42-202ENST00000404008 GEMIN8Q9NWZ8 242 aaKnown RBP28.09■■■□□ 2.09
USP42-202ENST00000404008 NCOR2Q9Y618 2525 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 KCNE1BA0A087WTH5 132 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 TRBC2A0A5B9 178 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 TMEM120BA0PK00 339 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 C9orf172C9J069 976 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 OR7A17O14581 309 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 WFS1O76024 890 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 DXOO77932 396 aaKnown RBP28.08■■■□□ 2.09
USP42-202ENST00000404008 SUPT7LO94864 414 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 IRF8Q02556 426 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 CHIT1Q13231 466 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 LSMEM2Q8N112 164 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 MOCOSQ96EN8 888 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 ZNF285Q96NJ3 590 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 ZPBPQ9BS86 351 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 B3GNT4Q9C0J1 378 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 ASCL3Q9NQ33 180 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 SERTAD3Q9UJW9 196 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 B3GALT1Q9Y5Z6 326 aa28.08■■■□□ 2.09
USP42-202ENST00000404008 LOC105369274A0A096LPK9 316 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 LOC102723532A0A0G2JNH3 316 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 SRPX2O60687 465 aaPredicted RBP28.07■■■□□ 2.08
USP42-202ENST00000404008 H2AFYO75367 372 aaKnown RBP28.07■■■□□ 2.08
USP42-202ENST00000404008 CD22P20273 847 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 RBMS1P29558 406 aaKnown RBP28.07■■■□□ 2.08
USP42-202ENST00000404008 ALDH3A1P30838 453 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 BCL6P41182 706 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 SLC18A1P54219 525 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 ITGA1P56199 1179 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 SLBPQ14493 270 aaKnown RBP eCLIP28.07■■■□□ 2.08
USP42-202ENST00000404008 LARP7Q4G0J3 582 aaKnown RBP eCLIP28.07■■■□□ 2.08
USP42-202ENST00000404008 OR4N4Q8N0Y3 316 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 PPP4R1Q8TF05 950 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 TEFMQ96QE5 360 aaKnown RBP28.07■■■□□ 2.08
USP42-202ENST00000404008 EFCAB11Q9BUY7 163 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 MECRQ9BV79 373 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 SEMA4BQ9NPR2 832 aaPredicted RBP28.07■■■□□ 2.08
USP42-202ENST00000404008 ENAMQ9NRM1 1142 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 PCDHGA4Q9Y5G9 962 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 AK5Q9Y6K8 562 aa28.07■■■□□ 2.08
USP42-202ENST00000404008 CDRT15L2A8MXV6 281 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 HMGB1P1B2RPK0 211 aaPredicted RBP28.06■■■□□ 2.08
USP42-202ENST00000404008 H0YGG7 62 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 DYNC1I1O14576 645 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 LCMT2O60294 686 aaKnown RBP28.06■■■□□ 2.08
USP42-202ENST00000404008 BRINP1O60477 761 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 OR2B3O76000 313 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 CXCR2P25025 360 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 NAGLUP54802 743 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 CDH13P55290 713 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 VSX2P58304 361 aaPredicted RBP28.06■■■□□ 2.08
USP42-202ENST00000404008 ARF3P61204 181 aaPredicted RBP28.06■■■□□ 2.08
USP42-202ENST00000404008 CLCQ05315 142 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 TMEM164Q5U3C3 297 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 OR52B6Q8NGF0 335 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 THAP11Q96EK4 314 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 GSTO2Q9H4Y5 243 aa28.06■■■□□ 2.08
USP42-202ENST00000404008 FRYQ5TBA9 3013 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 NVLO15381 856 aaKnown RBP28.05■■■□□ 2.08
USP42-202ENST00000404008 OR1F1O43749 312 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 UGDHO60701 494 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 TRIM13O60858 407 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 TIAF1O95411 115 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 BPGMP07738 259 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 DHRS4L1P0CG22 281 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 LAPTM5Q13571 262 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 TCTE1Q5JU00 501 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 PWWP2BQ6NUJ5 590 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 TBC1D19Q8N5T2 526 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 CCNYL1Q8N7R7 359 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 MFSD9Q8NBP5 474 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 RERGQ96A58 199 aaPredicted RBP28.05■■■□□ 2.08
USP42-202ENST00000404008 NTMT1Q9BV86 223 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 PITHD1Q9GZP4 211 aaPredicted RBP28.05■■■□□ 2.08
USP42-202ENST00000404008 SPRTNQ9H040 489 aaPredicted RBP28.05■■■□□ 2.08
USP42-202ENST00000404008 ACTR8Q9H981 624 aa28.05■■■□□ 2.08
USP42-202ENST00000404008 FOXJ2Q9P0K8 574 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms