RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SPESP1Q6UW49 350 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 PIGWQ7Z7B1 504 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 Q8N9G6 341 aaPredicted RBP13.67□□□□□ -0.22
SKA1-202ENST00000398452 TTLQ8NG68 377 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 NCSTNQ92542 709 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 PRAP1Q96NZ9 151 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 FRG2BQ96QU4 278 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 CENPKQ9BS16 269 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 DPH7Q9BTV6 452 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 DNAAF2Q9NVR5 837 aaKnown RBP13.67□□□□□ -0.22
SKA1-202ENST00000398452 SPHK1Q9NYA1 384 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 ANKMY1Q9P2S6 941 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 ZNF490Q9ULM2 529 aaPredicted RBP13.67□□□□□ -0.22
SKA1-202ENST00000398452 TRIM33Q9UPN9 1127 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 BPTFQ12830 3046 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 PI4KAP42356 2102 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 ACACBO00763 2458 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 KNL1Q8NG31 2342 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 GOLGA8QA0A0J9YX86 632 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 GOLGA8OA6NCC3 632 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 GOLGA8NF8WBI6 632 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 H0YIV9 168 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 MANBAO00462 879 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 PIP5K1BO14986 540 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 WFS1O76024 890 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 EPORP19235 508 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 ARL4DP49703 201 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 FOXA1P55317 472 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 BTKQ06187 659 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 AMZ1Q400G9 498 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 STPG1Q5TH74 334 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 TMIGD1Q6UXZ0 262 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 KANSL1Q7Z3B3 1105 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 PLXDC1Q8IUK5 500 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 GBP7Q8N8V2 638 aaPredicted RBP13.66□□□□□ -0.22
SKA1-202ENST00000398452 ABHD11Q8NFV4 315 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 RFWD2Q8NHY2 731 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 RHBDD1Q8TEB9 315 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 RSC1A1Q92681 617 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 ZUFSPQ96AP4 578 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 CCDC74AQ96AQ1 378 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 TUBGCP3Q96CW5 907 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 MTFMTQ96DP5 389 aaKnown RBP13.66□□□□□ -0.22
SKA1-202ENST00000398452 WDR34Q96EX3 536 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 SEC16BQ96JE7 1060 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 CD180Q99467 661 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 SYNDIG1Q9H7V2 258 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 TCF7L2Q9NQB0 619 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 FTSJ1Q9UET6 329 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 BTRCQ9Y297 605 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 DNAJC15Q9Y5T4 150 aa13.66□□□□□ -0.22
SKA1-202ENST00000398452 ARHGEF17Q96PE2 2063 aaPredicted RBP13.66□□□□□ -0.22
SKA1-202ENST00000398452 CACNA1BQ00975 2339 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 TP53BP1Q12888 1972 aaPredicted RBP13.65□□□□□ -0.22
SKA1-202ENST00000398452 OR1F1O43749 312 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 RRP9O43818 475 aaKnown RBP13.65□□□□□ -0.22
SKA1-202ENST00000398452 PRICKLE3O43900 615 aaPredicted RBP13.65□□□□□ -0.22
SKA1-202ENST00000398452 DCTN3O75935 186 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 LDOC1O95751 146 aaPredicted RBP13.65□□□□□ -0.22
SKA1-202ENST00000398452 LINC00032P0C843 101 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 GIMD1P0DJR0 217 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 HSD3B1P14060 373 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 ALOX15P16050 662 aaPredicted RBP13.65□□□□□ -0.22
SKA1-202ENST00000398452 HSD3B2P26439 372 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 GSTM2P28161 218 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 OR1D5P58170 312 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 NR6A1Q15406 480 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 TERF2Q15554 542 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 ATP6AP1LQ52LC2 224 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 SPDYAQ5MJ70 313 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 EPGNQ6UW88 154 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 CEP70Q8NHQ1 597 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 CNDP2Q96KP4 475 aaKnown RBP13.65□□□□□ -0.22
SKA1-202ENST00000398452 PPP3R2Q96LZ3 170 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 OR2A14Q96R47 310 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 NRTNQ99748 197 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 CCDC28BQ9BUN5 200 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 NT5DC2Q9H857 520 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 MEAF6Q9HAF1 191 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 MRGBPQ9NV56 204 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 CUEDC1Q9NWM3 386 aaPredicted RBP13.65□□□□□ -0.22
SKA1-202ENST00000398452 GEMIN8Q9NWZ8 242 aaKnown RBP13.65□□□□□ -0.22
SKA1-202ENST00000398452 ZNF225Q9UK10 706 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 POMT2Q9UKY4 750 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 CACNA1EQ15878 2313 aa13.65□□□□□ -0.22
SKA1-202ENST00000398452 TMEM131Q92545 1883 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 IGHV1OR21-1A0A087WYE8 117 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 A0A1B0GTL3 188 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 TRBC2A0A5B9 178 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 EME2A4GXA9 379 aaPredicted RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 C4orf47A7E2U8 309 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 CAPN5O15484 640 aaPredicted RBP13.64□□□□□ -0.23
SKA1-202ENST00000398452 CCDC22O60826 627 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 RASSF9O75901 435 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 MYO1DO94832 1006 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 PDYNP01213 254 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 SERPIND1P05546 499 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 ADRB1P08588 477 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 LBPP18428 481 aa13.64□□□□□ -0.23
SKA1-202ENST00000398452 PEBP1P30086 187 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms