RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 C19orf43Q9BQ61 176 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 TPT1P8Q9HAU6 139 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 ZNF229Q9UJW7 825 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 CLEC4EQ9ULY5 219 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 SCN8AQ9UQD0 1980 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.29□□□□□ -0.44
SHMT1-205ENST00000395684 UPK1BO75841 260 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 HIST1H2AGP0C0S8 130 aaPredicted RBP12.29□□□□□ -0.44
SHMT1-205ENST00000395684 PABPC1P11940 636 aaKnown RBP12.29□□□□□ -0.44
SHMT1-205ENST00000395684 COX7A2P14406 83 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 CD22P20273 847 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 HIST1H2ADP20671 130 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 GADD45AP24522 165 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 AQP1P29972 269 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 CAP1Q01518 475 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 SRSF11Q05519 484 aaKnown RBP12.29□□□□□ -0.44
SHMT1-205ENST00000395684 ABRQ12979 859 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 CHIT1Q13231 466 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 GPNMBQ14956 572 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 COLEC12Q5KU26 742 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 HOMEZQ8IX15 550 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 OR8J2Q8NGG1 315 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 CDC26Q8NHZ8 85 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 ADAMTS19Q8TE59 1207 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 HTRA1Q92743 480 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 HIST1H2AHQ96KK5 128 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 FCRL1Q96LA6 429 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 HIST1H2AJQ99878 128 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 H2AFJQ9BTM1 129 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 BBS2Q9BXC9 721 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 EPS8L2Q9H6S3 715 aa12.29□□□□□ -0.44
SHMT1-205ENST00000395684 METTL15A6NJ78 407 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 GFRA2O00451 464 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 GSTT2P0CG29 244 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 GSTT2BP0CG30 244 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 ACPPP15309 386 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 RRM2P31350 389 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 GRK5P34947 590 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 SEPHS1P49903 392 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 TPTEP56180 551 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 PTSQ03393 145 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 CDC20Q12834 499 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 VEZF1Q14119 521 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 DGKKQ5KSL6 1271 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 LRRC66Q68CR7 880 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 RETSATQ6NUM9 610 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 LACC1Q8IV20 430 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 P3H2Q8IVL5 708 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 CCDC103Q8IW40 242 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 CPA6Q8N4T0 437 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 HJURPQ8NCD3 748 aaPredicted RBP12.28□□□□□ -0.44
SHMT1-205ENST00000395684 SH3KBP1Q96B97 665 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 MTERF1Q99551 399 aaKnown RBP12.28□□□□□ -0.44
SHMT1-205ENST00000395684 EPYCQ99645 322 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 GABARAPL3Q9BY60 117 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 MMP27Q9H306 513 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 ELAC1Q9H777 363 aaKnown RBP12.28□□□□□ -0.44
SHMT1-205ENST00000395684 PSORS1C1Q9UIG5 152 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 FZD4Q9ULV1 537 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 DSCR3O14972 297 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 TBX1O43435 398 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 SOCS5O75159 536 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 GCM2O75603 506 aaPredicted RBP12.28□□□□□ -0.44
SHMT1-205ENST00000395684 RFPL2O75678 378 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 UGT2B10P36537 528 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 PFN3P60673 137 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 TUBA1BP68363 451 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 CARTPTQ16568 116 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 SOWAHCQ53LP3 525 aaPredicted RBP12.28□□□□□ -0.44
SHMT1-205ENST00000395684 STEAP3Q658P3 488 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 TUBA1AQ71U36 451 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 TMEM150AQ86TG1 271 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 TCAIMQ8N3R3 496 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 C2orf49Q9BVC5 232 aaPredicted RBP12.28□□□□□ -0.44
SHMT1-205ENST00000395684 CHST8Q9H2A9 424 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 RNF167Q9H6Y7 350 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 DNAJC11Q9NVH1 559 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 KLHL42Q9P2K6 505 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 TMPRSS11EQ9UL52 423 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 PCDHB11Q9Y5F2 797 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 MICAL3Q7RTP6 2002 aa12.28□□□□□ -0.44
SHMT1-205ENST00000395684 SERTM1A2A2V5 107 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 AGAP5A6NIR3 686 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 TMEM88BA6NKF7 163 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 C8GP07360 202 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 JUPP14923 745 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 LHCGRP22888 699 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 HNMTP50135 292 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 TAF12Q16514 161 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 BCL2A1Q16548 175 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 TIGD6Q17RP2 521 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 ZNF362Q5T0B9 420 aaPredicted RBP12.27□□□□□ -0.44
SHMT1-205ENST00000395684 GGHQ92820 318 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 FEVQ99581 238 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 CLSTN3Q9BQT9 956 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 C6orf62Q9GZU0 229 aaPredicted RBP12.27□□□□□ -0.44
SHMT1-205ENST00000395684 CPNE5Q9HCH3 593 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 ANKHQ9HCJ1 492 aa12.27□□□□□ -0.44
SHMT1-205ENST00000395684 FAM120CQ9NX05 1096 aaKnown RBP12.27□□□□□ -0.44
SHMT1-205ENST00000395684 QPCTLQ9NXS2 382 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms