RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 KLC3Q6P597 504 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 FAM198BQ6UWH4 519 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 TTLL10Q6ZVT0 673 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 CSNK1A1LQ8N752 337 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 NEIL2Q969S2 332 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 MTBPQ96DY7 904 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 SARGQ9BW04 601 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 NLNQ9BYT8 704 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 MRPS18BQ9Y676 258 aaKnown RBP20.74■□□□□ 0.91
CLN3-207ENST00000395653 CHD6Q8TD26 2715 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 C9J4A7 227 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 DSCR3O14972 297 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 KATNA1O75449 491 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 WDR47O94967 919 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 RECKO95980 971 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 ALAS2P22557 587 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 PTPN4P29074 926 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 C18orf21Q32NC0 220 aaPredicted RBP20.73■□□□□ 0.91
CLN3-207ENST00000395653 UBLCP1Q8WVY7 318 aaPredicted RBP20.73■□□□□ 0.91
CLN3-207ENST00000395653 EXT2Q93063 718 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 GPR78Q96P69 363 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 RUFY1Q96T51 708 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 PELI2Q9HAT8 420 aa20.73■□□□□ 0.91
CLN3-207ENST00000395653 PSMC3IPQ9P2W1 217 aaPredicted RBP20.73■□□□□ 0.91
CLN3-207ENST00000395653 PTBP2Q9UKA9 531 aaKnown RBP20.73■□□□□ 0.91
CLN3-207ENST00000395653 FARSAQ9Y285 508 aaKnown RBP20.73■□□□□ 0.91
CLN3-207ENST00000395653 ZFYVE26Q68DK2 2539 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 MGAQ8IWI9 3026 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 IQANK1A0A1B0GTG1 560 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 SYCE1LA8MT33 242 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 ONECUT2O95948 504 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 COL6A2P12110 1019 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 DEKP35659 375 aaKnown RBP20.72■□□□□ 0.91
CLN3-207ENST00000395653 GDF5P43026 501 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 GLRBP48167 497 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 RHDQ02161 417 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 NCF4Q15080 339 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 MUM1Q2TAK8 710 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 NKAIN1Q4KMZ8 207 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 CATSPEREQ5SY80 951 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 TIFABQ6ZNK6 161 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 VN1R4Q7Z5H5 301 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 TSNARE1Q96NA8 513 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 CAPS2Q9BXY5 557 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 ACTL8Q9H568 366 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 GPRC5BQ9NZH0 403 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 RUVBL1Q9Y265 456 aaKnown RBP20.72■□□□□ 0.91
CLN3-207ENST00000395653 LOC400499M0QZD8 3231 aa20.72■□□□□ 0.91
CLN3-207ENST00000395653 FEZF1A0PJY2 475 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 SUPT3HB4E1H0 165 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 NKX2-8O15522 239 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 SUPT3HO75486 399 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 CREG1O75629 220 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 STK16O75716 305 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 GNAZP19086 355 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 CDC16Q13042 620 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 TSNAXIP1Q2TAA8 658 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 HKDC1Q2TB90 917 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 GARNL3Q5VVW2 1013 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 NXPE4Q6UWF7 544 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 TMPRSS11BQ86T26 416 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 SYVN1Q86TM6 617 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 PLD6Q8N2A8 252 aaKnown RBP20.71■□□□□ 0.91
CLN3-207ENST00000395653 TBC1D19Q8N5T2 526 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 ENDOVQ8N8Q3 282 aaKnown RBP20.71■□□□□ 0.91
CLN3-207ENST00000395653 CABS1Q96KC9 395 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 C10orf90Q96M02 699 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 PPCSQ9HAB8 311 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 DNAJC11Q9NVH1 559 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 IFT80Q9P2H3 777 aaPredicted RBP20.71■□□□□ 0.91
CLN3-207ENST00000395653 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLN3-207ENST00000395653 NDOR1Q9UHB4 597 aa20.71■□□□□ 0.91
CLN3-207ENST00000395653 V9GYY5 206 aaPredicted RBP20.71■□□□□ 0.91
CLN3-207ENST00000395653 FER1L5A0AVI2 2057 aa20.7■□□□□ 0.91
CLN3-207ENST00000395653 TRBC2A0A5B9 178 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 UBXN8O00124 270 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 RFPL1O75677 317 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 CD63P08962 238 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 MTHFD2P13995 350 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 ITGAXP20702 1163 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 BCL6P41182 706 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 HSPA7P48741 367 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 CYP4F2P78329 520 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 CDC20Q12834 499 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 ERCC6LQ2NKX8 1250 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 TECRLQ5HYJ1 363 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 PRMT9Q6P2P2 845 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 EMBQ6PCB8 327 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 LRRC70Q7Z2Q7 622 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 ARHGEF39Q8N4T4 335 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 MFSD9Q8NBP5 474 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 AENQ8WTP8 325 aaKnown RBP20.7■□□□□ 0.9
CLN3-207ENST00000395653 UBTD2Q8WUN7 234 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 MVB12AQ96EY5 273 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 CATSPER2Q96P56 530 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 CD244Q9BZW8 370 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 PADI2Q9Y2J8 665 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 MDC1Q14676 2089 aaKnown RBP20.7■□□□□ 0.9
CLN3-207ENST00000395653 SEC16AO15027 2179 aa20.7■□□□□ 0.9
CLN3-207ENST00000395653 P2RX6O15547 441 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms