RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 HOXA9P31269 272 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 SLC15A3Q8IY34 581 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 SAMD14Q8IZD0 417 aaPredicted RBP14.04□□□□□ -0.16
TCOF1-202ENST00000377797 ADAP2Q9NPF8 381 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 SCN4AP35499 1836 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 LATO43561 262 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 JUNP05412 331 aaKnown RBP14.04□□□□□ -0.16
TCOF1-202ENST00000377797 ALDH4A1P30038 563 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 MPIP34949 423 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 THAP5Q7Z6K1 395 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 DTD2Q96FN9 168 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 KLHDC7BQ96G42 594 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 CLN6Q9NWW5 311 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 MYL12BO14950 172 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 NPC1O15118 1278 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 OPN1SWP03999 348 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 RGS8P57771 180 aaPredicted RBP14.04□□□□□ -0.16
TCOF1-202ENST00000377797 AFMIDQ63HM1 303 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 OR10Q1Q8NGQ4 319 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 BIRC7Q96CA5 298 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 IL21Q9HBE4 155 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 SPATA7Q9P0W8 599 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 SOX9P48436 509 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 FAM83CQ9BQN1 747 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 ABCG4Q9H172 646 aa14.04□□□□□ -0.16
TCOF1-202ENST00000377797 BMP7P18075 431 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 CTSKP43235 329 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 NEK5Q6P3R8 708 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 C17orf62Q9BQA9 187 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 STOX2Q9P2F5 926 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-202ENST00000377797 BCKDKO14874 412 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 NKX3-2P78367 333 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 GSTM4Q03013 218 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 C10orf62Q5T681 223 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-202ENST00000377797 RBM44Q6ZP01 1051 aaKnown RBP14.03□□□□□ -0.16
TCOF1-202ENST00000377797 YIPF4Q9BSR8 244 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 LAMP2P13473 410 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 BTN3A2P78410 334 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.03□□□□□ -0.16
TCOF1-202ENST00000377797 SCARB2Q14108 478 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 SHHQ15465 462 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 AMZ1Q400G9 498 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 OR52L1Q8NGH7 329 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 RASSF5Q8WWW0 418 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 NOBOXO60393 691 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 CREG1O75629 220 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 C1SP09871 688 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 TYRP1P17643 537 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 GTF2E2P29084 291 aaKnown RBP14.03□□□□□ -0.16
TCOF1-202ENST00000377797 BLMHQ13867 455 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 PLEKHM3Q6ZWE6 761 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 SVOPLQ8N434 492 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 MCCC1Q96RQ3 725 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-202ENST00000377797 MAT2BQ9NZL9 334 aa14.03□□□□□ -0.16
TCOF1-202ENST00000377797 POLR2CP19387 275 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 PAX7P23759 505 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 SOX6P35712 828 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 SUZ12Q15022 739 aaKnown RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 LARS2Q15031 903 aaKnown RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 TOR1AIP1Q5JTV8 583 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 EGFLAMQ63HQ2 1017 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 GALNT18Q6P9A2 607 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 OXR1Q8N573 874 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 ENDOVQ8N8Q3 282 aaKnown RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 CAMKVQ8NCB2 501 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 HUS1BQ8NHY5 278 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 DNASE1L2Q92874 299 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 FOXJ1Q92949 421 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 FBXL8Q96CD0 374 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 PKP4Q99569 1192 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 SDR39U1Q9NRG7 319 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 EVA1BQ9NVM1 165 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 ADAMTS6Q9UKP5 1117 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 PAIP2BQ9ULR5 123 aaKnown RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 NUMA1Q14980 2115 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 ZNFX1Q9P2E3 1918 aaKnown RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 CACNG3O60359 315 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 UGT2B11O75310 529 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 IMPDH2P12268 514 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 HSD3B1P14060 373 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 HSD3B2P26439 372 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 SHMT2P34897 504 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 ZNF155Q12901 538 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 ARMCX6Q7L4S7 300 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 GPR174Q9BXC1 333 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 C8orf33Q9H7E9 229 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 PDFQ9HBH1 243 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 FARSBQ9NSD9 589 aaKnown RBP14.02□□□□□ -0.16
TCOF1-202ENST00000377797 UTS2RQ9UKP6 389 aa14.02□□□□□ -0.16
TCOF1-202ENST00000377797 FAM47E-STBD1D6RA91 191 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 M0QX08 132 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 GTPBP1O00178 669 aaKnown RBP14.02□□□□□ -0.17
TCOF1-202ENST00000377797 NUAK1O60285 661 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 C6orf47O95873 294 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 POU2F1P14859 743 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 GSTT1P30711 240 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 DSTNP60981 165 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 SLC13A2Q13183 592 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 PRRT3Q5FWE3 981 aa14.02□□□□□ -0.17
TCOF1-202ENST00000377797 BNIPLQ7Z465 357 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms