RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 A0A0A6YYJ9 748 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 A0A1W2PR48 441 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SPECC1L-ADORA2AF8WAN1 911 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 K7EQS6 105 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CHUKO15111 745 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 HDAC3O15379 428 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SOCS5O75159 536 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RFPL2O75678 378 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 DCTN3O75935 186 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 KRT38O76015 456 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ANXA9O76027 345 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CSPG5O95196 566 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 KNG1P01042 644 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TFAP2AP05549 437 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 HSD17B1P14061 328 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 EPCAMP16422 314 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 UGT1A6P19224 532 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 UGT1A1P22309 533 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 UGT1A4P22310 534 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PEBP1P30086 187 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 SPRP35270 261 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 UGT1A3P35503 534 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 UGT1A5P35504 534 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ATP5C1P36542 298 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 CASP2P42575 452 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 NRIP1P48552 1158 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PXNP49023 591 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 CCT8P50990 548 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RENBPP51606 427 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 DIO3P55073 304 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 EFNB1P98172 346 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MEF2AQ02078 507 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 PMS2P11Q13670 270 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ABRAXAS2Q15018 415 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TGFBIQ15582 683 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MARC1Q5VT66 337 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 REP15Q6BDI9 236 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 FBXO46Q6PJ61 603 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 MBOAT1Q6ZNC8 495 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 EP400NLQ6ZTU2 488 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TPGS1Q6ZTW0 290 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RTL10Q7L3V2 364 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 HSD11B1LQ7Z5J1 315 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 LMNTD2Q8IXW0 634 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ADGRG5Q8IZF4 528 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CMTM8Q8IZV2 173 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ARHGAP18Q8N392 663 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MARVELD2Q8N4S9 558 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ARL14EPQ8N8R7 260 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 DDHD1Q8NEL9 900 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 IPMKQ8NFU5 416 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ITFG1Q8TB96 612 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 HCAR2Q8TDS4 363 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 VPS33AQ96AX1 596 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZBTB8AQ96BR9 441 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 LINC00615Q96LM1 132 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZNF583Q96ND8 569 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CCDC115Q96NT0 180 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MBOAT4Q96T53 435 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 NELL2Q99435 816 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 WFDC6Q9BQY6 131 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MRPL9Q9BYD2 267 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 POLR1EQ9GZS1 481 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 MRPL46Q9H2W6 279 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 EBF3Q9H4W6 596 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 POMKQ9H5K3 350 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CLMPQ9H6B4 373 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 FTSJ1Q9UET6 329 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MARCOQ9UEW3 520 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 STK39Q9UEW8 545 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CROTQ9UKG9 612 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZNF490Q9ULM2 529 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 MAGED2Q9UNF1 606 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 RUVBL2Q9Y230 463 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 TSC22D4Q9Y3Q8 395 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CHST2Q9Y4C5 530 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RAI2Q9Y5P3 530 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TDRD6O60522 2096 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 A6NCN8 305 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GOLGA6L10A6NI86 522 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SOCS2O14508 198 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PSMD3O43242 534 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PQBP1O60828 265 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 RAMP2O60895 175 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ATP5HO75947 161 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CLDN7O95471 211 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 INHBAP08476 426 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 VIMP08670 466 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 LTA4HP09960 611 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 GJA1P17302 382 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PCMT1P22061 227 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 JAK1P23458 1154 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TNFSF4P23510 183 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ATP5F1P24539 256 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 OR1E1P30953 314 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PPARGP37231 505 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 CDKN2CP42773 168 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CPA2P48052 419 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CD151P48509 253 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms