RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DMC1Q14565 340 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 SMU1Q2TAY7 513 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CTU2Q2VPK5 515 aaKnown RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 ZBED5Q49AG3 693 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 PRSS36Q5K4E3 855 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CPTPQ5TA50 214 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 METTL2BQ6P1Q9 378 aaKnown RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 FAM43BQ6ZT52 329 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CALHM3Q86XJ0 350 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 OR5AK3PQ8NH89 298 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 C19orf43Q9BQ61 176 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 TPT1P8Q9HAU6 139 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 ACSL6Q9UKU0 697 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 KCNE2Q9Y6J6 123 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 ATG2AQ2TAZ0 1938 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 SLC5A10A0PJK1 596 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 EIF3FO00303 357 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CISD3P0C7P0 127 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CDK4P11802 303 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 C6P13671 934 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 ACPPP15309 386 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 PRLHRP49683 370 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CYP4F2P78329 520 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CDKL4Q5MAI5 379 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 LIPJQ5W064 366 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 BORAQ6PGQ7 559 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 ZNF852Q6ZMS4 543 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 ADGRD2Q7Z7M1 963 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 MMP21Q8N119 569 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 ARL10Q8N8L6 244 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 TESCQ96BS2 214 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 TIFAQ96CG3 184 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 REXO5Q96IC2 774 aaKnown RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 OSBPL6Q9BZF3 934 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 WARS2Q9UGM6 360 aaKnown RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 FBXO10Q9UK96 956 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 FZD4Q9ULV1 537 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 MAN2B2Q9Y2E5 1009 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 TBC1D3BA6NDS4 549 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 SPINT1O43278 529 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 AP2A2O94973 939 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 KCNK5O95279 499 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 DDX6P26196 483 aaKnown RBP eCLIP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 NRIP1P48552 1158 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 RAE1P78406 368 aaKnown RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 VLDLRP98155 873 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CD47Q08722 323 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 FGD3Q5JSP0 725 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 CHCHD4Q8N4Q1 142 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 NUS1Q96E22 293 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 TM7SF3Q9NS93 570 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 ATXN10Q9UBB4 475 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 SPASTQ9UBP0 616 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 BAG5Q9UL15 447 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 PNMA8BQ9ULN7 279 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 RUVBL1Q9Y265 456 aaKnown RBP9.98□□□□□ -0.81
LIMA1-201ENST00000341247 TMED5Q9Y3A6 229 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 IRAK3Q9Y616 596 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 LRRK1Q38SD2 2015 aa9.98□□□□□ -0.81
LIMA1-201ENST00000341247 LINC01553A4QN01 128 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 NPC1O15118 1278 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 POP7O75817 140 aaKnown RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 FMO3P31513 532 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 CRATP43155 626 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 PPP2R2BQ00005 443 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 FPGSQ05932 587 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 GAB1Q13480 694 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 VMACQ2NL98 169 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 TMEM240Q5SV17 173 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 ZCCHC7Q8N3Z6 543 aaKnown RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 PLA2G15Q8NCC3 412 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 WDR48Q8TAF3 677 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 KLK6Q92876 244 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 CIDECQ96AQ7 238 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 ZNF707Q96C28 371 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 DTD2Q96FN9 168 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 HSH2DQ96JZ2 352 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 RBM4BQ9BQ04 359 aaKnown RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 RBM4Q9BWF3 364 aaKnown RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 ASF1AQ9Y294 204 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 WDFY4Q6ZS81 3184 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 LOC100130705A0A1B0GUX0 176 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 TNRC18O15417 2968 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 PCDH7O60245 1069 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 SCN2BO60939 215 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 C1orf105O95561 183 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 SOD1P00441 154 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 RETP07949 1114 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 C7P10643 843 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 CD247P20963 164 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 MATN1P21941 496 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 FSHRP23945 695 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 EPHA2P29317 976 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 DCDC1P59894 354 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 ZNF385BQ569K4 471 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 CYP4Z1Q86W10 505 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 HORMAD1Q86X24 394 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 ZZZ3Q8IYH5 903 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 OR4A15Q8NGL6 344 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms