RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SYNPO2LQ9H987 977 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 SIDT1Q9NXL6 827 aaKnown RBP21.24■□□□□ 0.99
SDC3-202ENST00000339394 RNF11Q9Y3C5 154 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 LOXL2Q9Y4K0 774 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 NPHS1O60500 1241 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 MSL3P1P0C860 447 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 CCL4P13236 92 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 BGNP21810 368 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 CXCR2P25025 360 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 GABRA4P48169 554 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 ATP1A2P50993 1020 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 ERVPABLB-1P60509 514 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 REEP5Q00765 189 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 CYP4F3Q08477 520 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 GPR19Q15760 415 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 ZC3H12BQ5HYM0 836 aaKnown RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 FRMPD2BQ6IN97 320 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 MCATQ8IVS2 390 aaKnown RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 BMPERQ8N8U9 685 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 L3MBTL4Q8NA19 623 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 OR4F6Q8NGB9 312 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 OR2A5Q96R48 311 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 TRMOQ9BU70 441 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 INTS9Q9NV88 658 aaKnown RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 SPTBN4Q9H254 2564 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 A0A1W2PNU3 283 aaPredicted RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 OR1F1O43749 312 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 SERPINE1P05121 402 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 HGFP14210 728 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 BCL6P41182 706 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 RPS15AP62244 130 aaKnown RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 EIF3IQ13347 325 aaKnown RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 ARL13AQ5H913 290 aaPredicted RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 PAGE2BQ5JRK9 111 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 LETMD1Q6P1Q0 360 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 TMIGD1Q6UXZ0 262 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 SYVN1Q86TM6 617 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 KRT78Q8N1N4 520 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 PRR11Q96HE9 360 aaPredicted RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 OR6C1Q96RD1 312 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 DRC3Q9H069 523 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 FGF21Q9NSA1 209 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 ZNF490Q9ULM2 529 aaPredicted RBP21.23■□□□□ 0.99
SDC3-202ENST00000339394 PLCL2Q9UPR0 1127 aa21.23■□□□□ 0.99
SDC3-202ENST00000339394 KCNE1BA0A087WTH5 132 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 CCDC187A0A096LP49 1063 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 TRBC2A0A5B9 178 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 HYAL3O43820 417 aaPredicted RBP21.22■□□□□ 0.99
SDC3-202ENST00000339394 ARRB2P32121 409 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 SERPINB5P36952 375 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 HNF4AP41235 474 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 ACY1Q03154 408 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 FOXM1Q08050 763 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 TUBB3Q13509 450 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 LAPTM5Q13571 262 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 RCN2Q14257 317 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 RBBP5Q15291 538 aaKnown RBP21.22■□□□□ 0.99
SDC3-202ENST00000339394 CPSF6Q16630 551 aaKnown RBP eCLIP21.22■□□□□ 0.99
SDC3-202ENST00000339394 GRHL2Q6ISB3 625 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 ATG14Q6ZNE5 492 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 GPRIN3Q6ZVF9 776 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 LSMEM2Q8N112 164 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 ANKRD53Q8N9V6 530 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 AGAP11Q8TF27 550 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 N4BP2L2Q92802 583 aaPredicted RBP21.22■□□□□ 0.99
SDC3-202ENST00000339394 SHCBP1LQ9BZQ2 653 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 PITHD1Q9GZP4 211 aaPredicted RBP21.22■□□□□ 0.99
SDC3-202ENST00000339394 MID1IP1Q9NPA3 183 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 STK38LQ9Y2H1 464 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 PCDHGA4Q9Y5G9 962 aa21.22■□□□□ 0.99
SDC3-202ENST00000339394 ASPMQ8IZT6 3477 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 LOC105369274A0A096LPK9 316 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 LOC102723532A0A0G2JNH3 316 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 PMS2P1A4D2B8 440 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 SRPX2O60687 465 aaPredicted RBP21.21■□□□□ 0.99
SDC3-202ENST00000339394 ESRRBO95718 433 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 CHRNGP07510 517 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 CTSBP07858 339 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 ITIH1P19827 911 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 GRK2P25098 689 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 SCTRP47872 440 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 PKNOX1P55347 436 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 GALNT1Q10472 559 aaPredicted RBP21.21■□□□□ 0.99
SDC3-202ENST00000339394 FOXC1Q12948 553 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 HIST2H2ACQ16777 129 aaPredicted RBP21.21■□□□□ 0.99
SDC3-202ENST00000339394 HIST2H2AA3Q6FI13 130 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 OR4N4Q8N0Y3 316 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 TBC1D19Q8N5T2 526 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 ARFGAP2Q8N6H7 521 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 WDR36Q8NI36 951 aaKnown RBP21.21■□□□□ 0.99
SDC3-202ENST00000339394 ZNF501Q96CX3 271 aaPredicted RBP21.21■□□□□ 0.99
SDC3-202ENST00000339394 PCM1Q15154 2024 aa21.21■□□□□ 0.99
SDC3-202ENST00000339394 B4E171 279 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 TMEM150CB9EJG8 249 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 H0YGG7 62 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 PLD2O14939 933 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 OR4F21O95013 312 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 JMJD7P0C870 316 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 TSPAN7P41732 249 aa21.2■□□□□ 0.98
SDC3-202ENST00000339394 ARF3P61204 181 aaPredicted RBP21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms