RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PLEKHO2Q8TD55 490 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 MYOCQ99972 504 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM121BQ9BXQ6 578 aaPredicted RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 AKTIPQ9H8T0 292 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 C1orf196B1AJZ1 125 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 FPR1P21462 350 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 FUT4P22083 530 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 L1CAMP32004 1257 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 LUMP51884 338 aaPredicted RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 SDHAF4Q5VUM1 108 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 PKP4Q99569 1192 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 MCCC2Q9HCC0 563 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 CENPMQ9NSP4 180 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 NLGN3Q9NZ94 848 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ERVW-1Q9UQF0 538 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 IFNA10P01566 189 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 GSCP56915 257 aaPredicted RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM53Q6P2H8 277 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 PHTF2Q8N3S3 785 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 NAT16Q8N8M0 369 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 PMEPA1Q969W9 287 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 BIRC8Q96P09 236 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ELOVL2Q9NXB9 296 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 LAMP5Q9UJQ1 280 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 UBIAD1Q9Y5Z9 338 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 MANSC4A6NHS7 340 aaPredicted RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 MEIS2O14770 477 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 HTR2BP41595 481 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ALDH3B2P48448 385 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 PLA2G16P53816 162 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 HADHBP55084 474 aaKnown RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ST3GAL3Q11203 375 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF572Q7Z3I7 529 aaPredicted RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ARL14Q8N4G2 192 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 SPPL2BQ8TCT7 592 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 RGMAQ96B86 450 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 BORCS8Q96FH0 119 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ASPNQ9BXN1 380 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 TGFB1I1O43294 461 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 CSF2P04141 144 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 NUDT13Q86X67 352 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM139Q8IV31 216 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 TBL1XR1Q9BZK7 514 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 PSMD8P48556 350 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 NUDT6P53370 316 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ATXN7L3Q14CW9 347 aaPredicted RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 ATAD3CQ5T2N8 411 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 PDZD9Q8IXQ8 264 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 OR8S1Q8NH09 359 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 CASTOR1Q8WTX7 329 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 THEM6Q8WUY1 208 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 GIMAP5Q96F15 307 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 TIGARQ9NQ88 270 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 POP4O95707 220 aaKnown RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 APODP05090 189 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 GLUD2P49448 558 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 BEX3Q00994 111 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 IL10RBQ08334 325 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 LPPQ93052 612 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM246Q9BRR3 403 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 GPR89AB7ZAQ6 455 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 TLX2O43763 284 aaPredicted RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 BCAS2O75934 225 aaPredicted RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 GPR89BP0CG08 455 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 HOXD8P13378 290 aaPredicted RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 DNASE1P24855 282 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 GRIA2P42262 883 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 CD47Q08722 323 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 ABRAXAS2Q15018 415 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 Q8N402 240 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 MTG2Q9H4K7 406 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 ZDHHC4Q9NPG8 344 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 GTF2IRD1Q9UHL9 959 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 ST14Q9Y5Y6 855 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 H0YAE9 185 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 MAGEA11P43364 429 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 IRF9Q00978 393 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 KRBOX4Q5JUW0 171 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 TSPAN33Q86UF1 283 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 C7orf61Q8IZ16 206 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 LNX2Q8N448 690 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 OR52E4Q8NGH9 312 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 HMCESQ96FZ2 354 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 HYKKA2RU49 373 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 NPIPA5E9PKD4 350 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 SCDO00767 359 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 PROM1O43490 865 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 FARS2O95363 451 aaKnown RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 IFNA5P01569 189 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 TACR2P21452 398 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 FAM124AQ86V42 546 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 SAMD12Q8N8I0 201 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 SLC25A36Q96CQ1 311 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 WRAP53Q9BUR4 548 aaKnown RBP13.5□□□□□ -0.25
CSPG4-201ENST00000308508 B3GAT2Q9NPZ5 323 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 CTPS2Q9NRF8 586 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 NPIPA1Q9UND3 350 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 RIC1Q4ADV7 1423 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 HSBP1L1C9JCN9 74 aa13.5□□□□□ -0.25
CSPG4-201ENST00000308508 MEN1O00255 615 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms