RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 BFARQ9NZS9 450 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 DRG1Q9Y295 367 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 VPS9D1Q9Y2B5 631 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 ZNF835Q9Y2P0 537 aa13.99□□□□□ -0.17
CCDC88B-201ENST00000301897 SPG11Q96JI7 2443 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 A0A0A6YYC8 382 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 IGKV1-8A0A0C4DH67 115 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 TCRBV7S2A1N4TA0A589 114 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 KRT87PA6NCN2 255 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 ARHGEF33A8MVX0 844 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 H0YIG0 161 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 I3L1I5 382 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 FFAR3O14843 346 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 GPR42O15529 346 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 FOXS1O43638 330 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 PSIP1O75475 530 aaKnown RBP13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 HRH2P25021 359 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 NPY2RP49146 381 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 AGTR2P50052 363 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 PNLIPRP1P54315 467 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 ADORA2A-AS1P86434 159 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 TSTA3Q13630 321 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 PTK6Q13882 451 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 EXT1Q16394 746 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 C3AR1Q16581 482 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 BTBD16Q32M84 506 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 ACER2Q5QJU3 275 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 SEL1L2Q5TEA6 688 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 H3F3CQ6NXT2 135 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 SUSD1Q6UWL2 747 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 SPPL2CQ8IUH8 684 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 TMEM178AQ8NBL3 297 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 FAM98AQ8NCA5 519 aaKnown RBP13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 C14orf79Q96F83 325 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 GPR137Q96N19 417 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 BIRC8Q96P09 236 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 CYTH2Q99418 400 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 UTP23Q9BRU9 249 aaKnown RBP13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 VN1R1Q9GZP7 353 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 TAC3Q9UHF0 121 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 PCYOX1Q9UHG3 505 aa13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 PACSIN2Q9UNF0 486 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-201ENST00000301897 A8MUI8 341 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 SEC24DO94855 1032 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 NSA2O95478 260 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 FTCDO95954 541 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 CD46P15529 392 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 CHRM3P20309 590 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 EEF1DP29692 281 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 SESN2P58004 480 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 YBX1P67809 324 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 ALDH6A1Q02252 535 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 KIF5AQ12840 1032 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 MEP1AQ16819 746 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 CTSL3PQ5NE16 218 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 MEI1Q5TIA1 1274 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 ARMC3Q5W041 872 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 RAD9BQ6WBX8 426 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 ZNF295-AS1Q8N0V1 137 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 FBXO15Q8NCQ5 510 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 M1APQ8TC57 530 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 CHTF18Q8WVB6 975 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 LPGAT1Q92604 370 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 HES6Q96HZ4 224 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 SPOCK3Q9BQ16 436 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 TINAGQ9UJW2 476 aa13.97□□□□□ -0.17
CCDC88B-201ENST00000301897 A0A0U1RQJ8 604 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 ASPDHA6ND91 283 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 E5RI56 91 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 FAM227AF5H4B4 570 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 VAPBO95292 243 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 FMO4P31512 558 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 CDK16Q00536 496 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 PMP22Q01453 160 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 TUBA3CQ13748 450 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 SYT16Q17RD7 645 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 TYSND1Q2T9J0 566 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 KLHL38Q2WGJ6 581 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 TTLL9Q3SXZ7 439 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 MINDY4Q4G0A6 757 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 MFSD4BQ5TF39 518 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 TUBA3EQ6PEY2 450 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 SPNS3Q6ZMD2 512 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 ADCK2Q7Z695 626 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 PCGF5Q86SE9 256 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 BEST3Q8N1M1 668 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 SLC5A8Q8N695 610 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 MDS2Q8NDY4 140 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 ADAMTS18Q8TE60 1221 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 THAP11Q96EK4 314 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 FAM129AQ9BZQ8 928 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 KCNK13Q9HB14 408 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 KLHL42Q9P2K6 505 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 ITGB1BP2Q9UKP3 347 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 MEMO1Q9Y316 297 aa13.96□□□□□ -0.17
CCDC88B-201ENST00000301897 E7ENX8 843 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 SMAPO00193 183 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 HAT1O14929 419 aa13.95□□□□□ -0.18
CCDC88B-201ENST00000301897 KIF5CO60282 957 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms