RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 PDZK1P1A8MUH7 402 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 H0Y8X5 98 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 MTRF1O75570 445 aaKnown RBP13.74□□□□□ -0.21
C9orf3-202ENST00000297979 KCNH1O95259 989 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 CDH1P12830 882 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 DGKEP52429 567 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 BNIP2Q12982 314 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 PWP1Q13610 501 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 MAPKAPK3Q16644 382 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 CLPPQ16740 277 aaPredicted RBP13.74□□□□□ -0.21
C9orf3-202ENST00000297979 RABL3Q5HYI8 236 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 NANOGP8Q6NSW7 305 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 SMPDL3AQ92484 453 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 BMFQ96LC9 184 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 WDR92Q96MX6 357 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 TRIM8Q9BZR9 551 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 TRIM4Q9C037 500 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 NANOGQ9H9S0 305 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 GMPR2Q9P2T1 348 aaKnown RBP13.74□□□□□ -0.21
C9orf3-202ENST00000297979 TAC3Q9UHF0 121 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 FOXE1O00358 373 aaPredicted RBP13.73□□□□□ -0.21
C9orf3-202ENST00000297979 MYO1DO94832 1006 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 ETHE1O95571 254 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 CHRNB1P11230 501 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 HTR1BP28222 390 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 AKT2P31751 481 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 EEFSECP57772 596 aaKnown RBP13.73□□□□□ -0.21
C9orf3-202ENST00000297979 RPS13P62277 151 aaKnown RBP13.73□□□□□ -0.21
C9orf3-202ENST00000297979 TFF2Q03403 129 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 CLCA4Q14CN2 919 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 ENPP7Q6UWV6 458 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 RNF111Q6ZNA4 994 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 DHFR2Q86XF0 187 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 OR1E3Q8WZA6 343 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 UBE2E3Q969T4 207 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 TESCQ96BS2 214 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 PDXPQ96GD0 296 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 ANKRD27Q96NW4 1050 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 OR52E6Q96RD3 313 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 ACAT2Q9BWD1 397 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 PCBD2Q9H0N5 130 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 NMRK1Q9NWW6 199 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 TRIOBPQ9H2D6 2365 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 SCAMP1O15126 338 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 NVLO15381 856 aaKnown RBP13.73□□□□□ -0.21
C9orf3-202ENST00000297979 FOXD2O60548 495 aaPredicted RBP13.73□□□□□ -0.21
C9orf3-202ENST00000297979 APBB3O95704 486 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 C8BP07358 591 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 CTBSQ01459 385 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 MEF2AQ02078 507 aaPredicted RBP13.73□□□□□ -0.21
C9orf3-202ENST00000297979 UAP1L1Q3KQV9 507 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 SPIN4Q56A73 249 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 LPCAT2Q7L5N7 544 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 C17orf64Q86WR6 236 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 SYT12Q8IV01 421 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 GTF2H4Q92759 462 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 SH3KBP1Q96B97 665 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 C11orf24Q96F05 449 aaPredicted RBP13.73□□□□□ -0.21
C9orf3-202ENST00000297979 PPM1MQ96MI6 270 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 CGREF1Q99674 301 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 NRTNQ99748 197 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 SPNS1Q9H2V7 528 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 ALG2Q9H553 416 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 DMRT3Q9NQL9 472 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 DUSP12Q9UNI6 340 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 PCM1Q15154 2024 aa13.73□□□□□ -0.21
C9orf3-202ENST00000297979 DNAJA2O60884 412 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 IGLV3-19P01714 112 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PRPS1L1P21108 318 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 S100A3P33764 101 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PHEXP78562 749 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 MUM1Q2TAK8 710 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 GCNT7Q6ZNI0 430 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 KRT77Q7Z794 578 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 RIMKLAQ8IXN7 391 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 KRT78Q8N1N4 520 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 C1orf52Q8N6N3 182 aaKnown RBP13.72□□□□□ -0.21
C9orf3-202ENST00000297979 EGLN2Q96KS0 407 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 LRGUKQ96M69 825 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 TMEM74Q96NL1 305 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 CAMK1GQ96NX5 476 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 RAB11FIP5Q9BXF6 653 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 MVB12BQ9H7P6 319 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PELI2Q9HAT8 420 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PRDM8Q9NQV8 689 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PPT2Q9UMR5 302 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PRELID1Q9Y255 219 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PRMT3O60678 531 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 GSK3BP49841 420 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PLIN5Q00G26 463 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 LIPEQ05469 1076 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 KRT33BQ14525 404 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 LEXMQ3ZCV2 418 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 PTCRAQ6ISU1 281 aaPredicted RBP13.72□□□□□ -0.21
C9orf3-202ENST00000297979 SYT13Q7L8C5 426 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 FAM129CQ86XR2 697 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 LILRB1Q8NHL6 650 aaPredicted RBP13.72□□□□□ -0.21
C9orf3-202ENST00000297979 CHTF18Q8WVB6 975 aa13.72□□□□□ -0.21
C9orf3-202ENST00000297979 KCTD14Q9BQ13 255 aaPredicted RBP13.72□□□□□ -0.21
C9orf3-202ENST00000297979 CA14Q9ULX7 337 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms