RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FANCEQ9HB96 536 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 GABRR3A8MPY1 467 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 SCAMP2O15127 329 aaKnown RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 ANXA4P09525 319 aaPredicted RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 NUDT7P0C024 238 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 AGXTP21549 392 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 PIGFQ07326 219 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 CEP68Q76N32 757 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 GALNT5Q7Z7M9 940 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 SYTL1Q8IYJ3 562 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 CHDHQ8NE62 594 aaPredicted RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 FOPNLQ96NB1 174 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 DUSP26Q9BV47 211 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 ZDHHC4Q9NPG8 344 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 FAM120CQ9NX05 1096 aaKnown RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 ANTXRLA6NF34 631 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 OTOL1A6NHN0 477 aaPredicted RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 H3BMQ9 156 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 SLC9A3R1O14745 358 aaPredicted RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 PRMT3O60678 531 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 C1orf105O95561 183 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 GBAP04062 536 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 CRHBPP24387 322 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 CPZQ66K79 652 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 C12orf76Q8N812 135 aaPredicted RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 SP7Q8TDD2 431 aaPredicted RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 COG8Q96MW5 612 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 VPS4AQ9UN37 437 aa19.37■□□□□ 0.69
VPS53-201ENST00000291074 SAMD4AQ9UPU9 718 aaKnown RBP19.37■□□□□ 0.69
VPS53-201ENST00000291074 GPX2P18283 190 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 IL1RNP18510 177 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 MAGEA2P43356 314 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 CD47Q08722 323 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 STARD3Q14849 445 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 ZNF658BQ4V348 819 aaPredicted RBP19.36■□□□□ 0.69
VPS53-201ENST00000291074 LAIR2Q6ISS4 152 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 SLCO4C1Q6ZQN7 724 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 GPR155Q7Z3F1 870 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 DCP2Q8IU60 420 aaKnown RBP19.36■□□□□ 0.69
VPS53-201ENST00000291074 ARL10Q8N8L6 244 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 GAB3Q8WWW8 586 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 TIMMDC1Q9NPL8 285 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 MYO1DO94832 1006 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 HOXA9P31269 272 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 GAB1Q13480 694 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 MYBPC3Q14896 1274 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 RAET1GQ6H3X3 334 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 XKR5Q6UX68 686 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 NLRP8Q86W28 1048 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 TPT1P8Q9HAU6 139 aa19.36■□□□□ 0.69
VPS53-201ENST00000291074 LOC100130705A0A1B0GUX0 176 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 GNG14A0A1W2PPG7 69 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 MYO1GB0I1T2 1018 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 SAP18O00422 153 aaKnown RBP19.35■□□□□ 0.69
VPS53-201ENST00000291074 LILRB5O75023 590 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 STT3AP46977 705 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 VLDLRP98155 873 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 MEF2AQ02078 507 aaPredicted RBP19.35■□□□□ 0.69
VPS53-201ENST00000291074 FNDC3BQ53EP0 1204 aaKnown RBP19.35■□□□□ 0.69
VPS53-201ENST00000291074 CRTC3Q6UUV7 619 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 BRF2Q9HAW0 419 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 KCNE2Q9Y6J6 123 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 MMP20O60882 483 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 CPNE6O95741 557 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 HNRNPA1P09651 372 aaKnown RBP eCLIP19.35■□□□□ 0.69
VPS53-201ENST00000291074 MATN1P21941 496 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 DCKP27707 260 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 KDELR2P33947 212 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 IL1RL1Q01638 556 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 ZNF33BQ06732 778 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 C6orf141Q5SZD1 244 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 CPTPQ5TA50 214 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 BROXQ5VW32 411 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 XAF1Q6GPH4 301 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 CYP4Z1Q86W10 505 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 KLHDC8AQ8IYD2 350 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 NRSN1Q8IZ57 195 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 CELF5Q8N6W0 485 aaKnown RBP19.35■□□□□ 0.69
VPS53-201ENST00000291074 C3orf18Q9UK00 162 aa19.35■□□□□ 0.69
VPS53-201ENST00000291074 NUP210Q8TEM1 1887 aaPredicted RBP19.34■□□□□ 0.69
VPS53-201ENST00000291074 A0A1W2PPW3 197 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 FOXD2O60548 495 aaPredicted RBP19.34■□□□□ 0.69
VPS53-201ENST00000291074 NTRK1P04629 796 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 ABCB1P08183 1280 aaPredicted RBP19.34■□□□□ 0.69
VPS53-201ENST00000291074 HTR1AP08908 422 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 CYP4B1P13584 511 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 MYOGP15173 224 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 HNRNPFP52597 415 aaKnown RBP19.34■□□□□ 0.69
VPS53-201ENST00000291074 CASP9P55211 416 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 FKBP9P1Q75LS8 142 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 HIPK1Q86Z02 1210 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 CHTF18Q8WVB6 975 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 MAL2Q969L2 176 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 NUS1Q96E22 293 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 SPNS1Q9H2V7 528 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 IL1RAPQ9NPH3 570 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 SH3BP4Q9P0V3 963 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 EXO1Q9UQ84 846 aaKnown RBP19.34■□□□□ 0.69
VPS53-201ENST00000291074 PCDHB11Q9Y5F2 797 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 C6P13671 934 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms