RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 AQP6Q13520 282 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 GANABQ14697 944 aaKnown RBP16.07■□□□□ 0.16
VPS54-201ENST00000272322 TMEM236Q5W0B7 351 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 RAET1GQ6H3X3 334 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 C11orf74Q86VG3 221 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 PLD3Q8IV08 490 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 UTP15Q8TED0 518 aaKnown RBP16.07■□□□□ 0.16
VPS54-201ENST00000272322 NRBF2Q96F24 287 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 PKP4Q99569 1192 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 SPHK2Q9NRA0 654 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 STOX2Q9P2F5 926 aaPredicted RBP16.07■□□□□ 0.16
VPS54-201ENST00000272322 TMEFF2Q9UIK5 374 aaPredicted RBP16.07■□□□□ 0.16
VPS54-201ENST00000272322 HS3ST2Q9Y278 367 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 GFRA2O00451 464 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 KCNK5O95279 499 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 EFEMP2O95967 443 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 POU1F1P28069 291 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 PTPN6P29350 595 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 GAB1Q13480 694 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 CPTPQ5TA50 214 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 CPZQ66K79 652 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 FAM20CQ8IXL6 584 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 OR5K1Q8NHB7 308 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 A0A096LPI6 279 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 ADH1AP07327 375 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 C8GP07360 202 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 SLC19A1P41440 591 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 CSNK1DP48730 415 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 ILF2Q12905 390 aaKnown RBP16.06■□□□□ 0.16
VPS54-201ENST00000272322 VMACQ2NL98 169 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 OR2T5Q6IEZ7 315 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 ZCCHC7Q8N3Z6 543 aaKnown RBP16.06■□□□□ 0.16
VPS54-201ENST00000272322 GOLM1Q8NBJ4 401 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 OR7G3Q8NG95 312 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 OR2T29Q8NH02 315 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 TBC1D15Q8TC07 691 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 KLK6Q92876 244 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 LRRC3BQ96PB8 259 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 SPNS1Q9H2V7 528 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 TMEM184CQ9NVA4 438 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 TRIM43BA6NCK2 446 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 H3BM21 787 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 KPNA5O15131 536 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 SGTAO43765 313 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 ABCB7O75027 752 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 ISL1P61371 349 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 NPTX1Q15818 432 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 TMC5Q6UXY8 1006 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 C12orf40Q86WS4 652 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 CACTIN-AS1Q8N1I8 211 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 CBARPQ8N350 705 aaPredicted RBP16.06■□□□□ 0.16
VPS54-201ENST00000272322 TTC29Q8NA56 475 aaPredicted RBP16.06■□□□□ 0.16
VPS54-201ENST00000272322 OR4A15Q8NGL6 344 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 TRIM43Q96BQ3 446 aaPredicted RBP16.06■□□□□ 0.16
VPS54-201ENST00000272322 CMTM7Q96FZ5 175 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 MAGED4Q96JG8 741 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 KRT84Q9NSB2 600 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 ZNF639Q9UID6 485 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 ERVW-1Q9UQF0 538 aa16.06■□□□□ 0.16
VPS54-201ENST00000272322 J3KTA2 159 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 SYN1P17600 705 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 SLC7A9P82251 487 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 CDK5R2Q13319 367 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 OLIG3Q7RTU3 272 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 LRRC70Q7Z2Q7 622 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 ECHDC3Q96DC8 303 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 RDH14Q9HBH5 336 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 H0YAE9 185 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 PRPS2P11908 318 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 JUPP14923 745 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 NCS1P62166 190 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 EMX1Q04741 257 aaPredicted RBP16.05■□□□□ 0.16
VPS54-201ENST00000272322 ABHD18Q0P651 414 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 CNTN1Q12860 1018 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 NFE2L1Q14494 772 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 DUOXA1Q1HG43 343 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 PIK3C3Q8NEB9 887 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 WDR48Q8TAF3 677 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 CLP1Q92989 425 aaKnown RBP16.05■□□□□ 0.16
VPS54-201ENST00000272322 DTNBP1Q96EV8 351 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 HERC2P3Q9BVR0 1158 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 GBF1Q92538 1859 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 COL4A6Q14031 1691 aa16.05■□□□□ 0.16
VPS54-201ENST00000272322 FAM227AF5H4B4 570 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 LZTS3O60299 673 aaPredicted RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 FAM20BO75063 409 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 BCAS1O75363 584 aaPredicted RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 MYO1DO94832 1006 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 C6orf47O95873 294 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 FABP3P05413 133 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 KLK1P06870 262 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 HSMCR30P0CW71 290 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 IMPA1P29218 277 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 RRM2P31350 389 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 SLC6A12P48065 614 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 NR1D2Q14995 579 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 LRRC26Q2I0M4 334 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 TMCO5AQ8N6Q1 288 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 OR13F1Q8NGS4 319 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 EMILIN2Q9BXX0 1053 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms