RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 ST6GAL1P15907 406 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 TSPAN8P19075 237 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 MAGP20916 626 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 GRK3P35626 688 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 ERVPABLB-1P60509 514 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 SH3BP2P78314 561 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 CSNK1G2P78368 415 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 INSM1Q01101 510 aaPredicted RBP11.83□□□□□ -0.52
LINC00339-213ENST00000642137 BST1Q10588 318 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 TRAF3Q13114 568 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 DOC2AQ14183 400 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 HIST2H2ACQ16777 129 aaPredicted RBP11.83□□□□□ -0.52
LINC00339-213ENST00000642137 RSPO4Q2I0M5 234 aaPredicted RBP11.83□□□□□ -0.52
LINC00339-213ENST00000642137 GGTA1PQ4G0N0 100 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 ARL13AQ5H913 290 aaPredicted RBP11.83□□□□□ -0.52
LINC00339-213ENST00000642137 CDCP2Q5VXM1 449 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 CES4AQ5XG92 561 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 HIST2H2AA3Q6FI13 130 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 GRHL2Q6ISB3 625 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 FBXO42Q6P3S6 717 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 RBM44Q6ZP01 1051 aaKnown RBP11.83□□□□□ -0.52
LINC00339-213ENST00000642137 RGS9BPQ6ZS82 235 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 TMPRSS11BQ86T26 416 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 TRIM73Q86UV7 250 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 PAQR7Q86WK9 346 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 SLITRK4Q8IW52 837 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 KRT78Q8N1N4 520 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 CHCHD4Q8N4Q1 142 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 OR4F6Q8NGB9 312 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 OR52B6Q8NGF0 335 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 LRRC8CQ8TDW0 803 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 AGAP11Q8TF27 550 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 GRAMD1AQ96CP6 724 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 FAM122AQ96E09 287 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 TCTN2Q96GX1 697 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 SLC41A2Q96JW4 573 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 TMEM74Q96NL1 305 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 AIF1LQ9BQI0 150 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 ZMYND15Q9H091 742 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 ZNF768Q9H5H4 540 aaKnown RBP11.83□□□□□ -0.52
LINC00339-213ENST00000642137 SYNDIG1Q9H7V2 258 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 ACTR8Q9H981 624 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 MID1IP1Q9NPA3 183 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 KLHL3Q9UH77 587 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 TRPS1Q9UHF7 1281 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 ZNF225Q9UK10 706 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 BTRCQ9Y297 605 aa11.83□□□□□ -0.52
LINC00339-213ENST00000642137 RIF1Q5UIP0 2472 aaKnown RBP11.83□□□□□ -0.52
LINC00339-213ENST00000642137 ZFHX2Q9C0A1 2572 aaPredicted RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 A8MU76 341 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 UBFD1O14562 309 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 SNNO75324 88 aaPredicted RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 RASSF9O75901 435 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 OR4F21O95013 312 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 KCNK5O95279 499 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 HSPA4LO95757 839 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 MT-CO3P00414 261 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 ENO1P06733 434 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 FTH1P19P0C7X4 201 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 HGFP14210 728 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 PVRP15151 417 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 NELFEP18615 380 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 MPSTP25325 297 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 VARSP26640 1264 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 CCKBRP32239 447 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 CCR10P46092 362 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 NOVA1P51513 510 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 HSD11B2P80365 405 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 SIM1P81133 766 aaPredicted RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 ZIC1Q15915 447 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 ZC3H12BQ5HYM0 836 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 PAGE2BQ5JRK9 111 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 SNAP47Q5SQN1 464 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 ATG14Q6ZNE5 492 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 GPRIN3Q6ZVF9 776 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 ADCK2Q7Z695 626 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 SYVN1Q86TM6 617 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 CUZD1Q86UP6 607 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 ALYREFQ86V81 257 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 KIRREL3Q8IZU9 778 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 CLYBLQ8N0X4 340 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 D2HGDHQ8N465 521 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 DNAJC22Q8N4W6 341 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 TBC1D19Q8N5T2 526 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 C19orf47Q8N9M1 422 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 UBE2E3Q969T4 207 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 THAP11Q96EK4 314 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 C20orf27Q9GZN8 174 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 ILKAPQ9H0C8 392 aaPredicted RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 CCDC134Q9H6E4 229 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 PDE7BQ9NP56 450 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 GEMIN8Q9NWZ8 242 aaKnown RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 HAO1Q9UJM8 370 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 PILRAQ9UKJ1 303 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 ZNF490Q9ULM2 529 aaPredicted RBP11.82□□□□□ -0.52
LINC00339-213ENST00000642137 KLHL20Q9Y2M5 609 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 RNF11Q9Y3C5 154 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 RAP2CQ9Y3L5 183 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 TSC22D4Q9Y3Q8 395 aa11.82□□□□□ -0.52
LINC00339-213ENST00000642137 LAMA1P25391 3075 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms