RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 UGT1A4P22310 534 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UGT1A3P35503 534 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SREBF1P36956 1147 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FXR2P51116 673 aaKnown RBP eCLIP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RAB7AP51149 207 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 AQP5P55064 265 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TAS2R39P59534 338 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SCARF1Q14162 830 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 BTBD16Q32M84 506 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CCNJQ5T5M9 372 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 STEAP3Q658P3 488 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PDPK2PQ6A1A2 396 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM111BQ6SJ93 734 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLFN11Q7Z7L1 901 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MCOLN2Q8IZK6 566 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NPRL2Q8WTW4 380 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ELMO1Q92556 727 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 JSRP1Q96MG2 331 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 OR14A2Q96R54 314 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DCLRE1CQ96SD1 692 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TBCBQ99426 244 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TRMOQ9BU70 441 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UGT1A7Q9HAW7 530 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UGT1A10Q9HAW8 530 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UGT1A8Q9HAW9 530 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CD93Q9NPY3 652 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ETNK2Q9NVF9 386 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF69Q9UC07 566 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NDRG2Q9UN36 371 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 HSPB11Q9Y547 144 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NME7Q9Y5B8 376 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ANAPC1Q9H1A4 1944 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 A0A087WWV3 80 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DRGXA6NNA5 263 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 F8VP50 259 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 AP2A2O94973 939 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ITGB2P05107 769 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ANXA3P12429 323 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PRKACBP22694 351 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF41P51814 821 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 BACE1P56817 501 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 OR4D2P58180 307 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DYNLL1P63167 89 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CACNB2Q08289 660 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CRMP1Q14194 572 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ABCA11PQ4W5N1 156 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FGD3Q5JSP0 725 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NCCRP1Q6ZVX7 275 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NPAS4Q8IUM7 802 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC30A8Q8IWU4 369 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZFPM1Q8IX07 1006 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM104Q8NE00 496 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 OR9K2Q8NGE7 335 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NDRG1Q92597 394 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 HS6ST2Q96MM7 605 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF649Q9BS31 505 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 GPR62Q9BZJ7 368 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 GPR61Q9BZJ8 451 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF700Q9H0M5 742 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CRISPLD1Q9H336 500 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MUC13Q9H3R2 512 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DHX35Q9H5Z1 703 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PLEKHA3Q9HB20 300 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SPHK2Q9NRA0 654 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MS4A12Q9NXJ0 267 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PAK5Q9P286 719 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ITGA11Q9UKX5 1188 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MCTS1Q9ULC4 181 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ATP7AQ04656 1500 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SDR42E2A6NKP2 422 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 BOLA2-SMG1P6H3BVE0 249 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SULT2B1O00204 365 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TBX3O15119 743 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SCN2BO60939 215 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MATN4O95460 622 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RAB36O95755 333 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SPATA31D3P0C874 917 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FPR2P25090 351 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PON1P27169 355 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ETV5P41161 510 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC19A1P41440 591 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PITPNBP48739 271 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MAB21L1Q13394 359 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TAPT1Q6NXT6 567 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NXPE4Q6UWF7 544 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SPATA31D4Q6ZUB0 917 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 GTF2H5Q6ZYL4 71 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RNF44Q7L0R7 432 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 JAZF1Q86VZ6 243 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RDH10Q8IZV5 341 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NLGN4XQ8N0W4 816 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC44A3Q8N4M1 653 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 GOLM1Q8NBJ4 401 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC22A8Q8TCC7 542 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 HHIPQ96QV1 700 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TCF12Q99081 682 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CORO1BQ9BR76 489 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 KIAA1683Q9H0B3 1180 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PIGVQ9NUD9 493 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ASB6Q9NWX5 421 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms