RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 GARNL3Q5VVW2 1013 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 OR4C11Q6IEV9 310 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 C16orf54Q6UWD8 224 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TMCO3Q6UWJ1 677 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 KIF6Q6ZMV9 814 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 RBPMS2Q6ZRY4 209 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 BRINP3Q76B58 766 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 PLPPR4Q7Z2D5 763 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 MAATS1Q7Z4T9 603 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ARHGAP22Q7Z5H3 698 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CPEB2Q7Z5Q1 589 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 ADCK1Q86TW2 530 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 COMMD2Q86X83 199 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZFAND4Q86XD8 727 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 DNAAF5Q86Y56 855 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 HSCBQ8IWL3 235 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TEX11Q8IYF3 940 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZBED8Q8IZ13 594 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 MAML2Q8IZL2 1156 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 EID3Q8N140 333 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 RAB42Q8N4Z0 105 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 LRTM2Q8N967 370 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TC2NQ8N9U0 490 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 POC5Q8NA72 575 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 THAP8Q8NA92 274 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 OR13C3Q8NGS6 347 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CFAP61Q8NHU2 1237 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SAP25Q8TEE9 199 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZNF721Q8TF20 911 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 LRRC15Q8TF66 581 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SSC4DQ8WTU2 575 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CHPT1Q8WUD6 406 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CCDC107Q8WV48 283 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SUSD6Q92537 303 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 PIK3R3Q92569 461 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SYN2Q92777 582 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 SAT2Q96F10 170 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 NSL1Q96IY1 281 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 RSRC1Q96IZ7 334 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 MAGED4Q96JG8 741 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 FAM71F1Q96KD3 344 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 SPATA33Q96N06 139 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NECTIN4Q96NY8 510 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 DGAT2Q96PD7 388 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 KLHL5Q96PQ7 755 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SPAG5Q96R06 1193 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 USP28Q96RU2 1077 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 PSMD1Q99460 953 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CPNE1Q99829 537 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NCAPGQ9BPX3 1015 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CHRDL1Q9BU40 450 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 FNDC11Q9BVV2 318 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 MXD3Q9BW11 206 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TDRD1Q9BXT4 1180 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 TEX12Q9BXU0 123 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SLC2A11Q9BYW1 496 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 FTOQ9C0B1 505 aaKnown RBP eCLIP0.34□□□□□ -2.36
VPS35-212ENST00000640313 MAF1Q9H063 256 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 FZD8Q9H461 694 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 GOLPH3LQ9H4A5 285 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ST6GALNAC4Q9H4F1 302 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 FNDC4Q9H6D8 234 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 MYH16Q9H6N6 1097 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 EGLN3Q9H6Z9 239 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SYNCQ9H7C4 482 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TRPV4Q9HBA0 871 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 RAVER2Q9HCJ3 691 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 DNAJC4Q9NNZ3 241 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP0.34□□□□□ -2.36
VPS35-212ENST00000640313 EIF2B3Q9NR50 452 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 SMC4Q9NTJ3 1288 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ECHDC1Q9NTX5 307 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TBC1D22BQ9NU19 505 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 GIMAP4Q9NUV9 329 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 IRAK4Q9NWZ3 460 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ARHGEF38Q9NXL2 777 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NDE1Q9NXR1 346 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NSMCE4AQ9NXX6 385 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NUDT4Q9NZJ9 180 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CHORDC1Q9UHD1 332 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 MUTYHQ9UIF7 546 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ANAPC2Q9UJX6 822 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 FBXO2Q9UK22 296 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 VPS28Q9UK41 221 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 PILRAQ9UKJ1 303 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZNF215Q9UL58 517 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 RNF150Q9ULK6 438 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 PCDHGB4Q9UN71 923 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 GPR34Q9UPC5 381 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZNF510Q9Y2H8 683 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 PADI2Q9Y2J8 665 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TMED3Q9Y3Q3 217 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SNX8Q9Y5X2 465 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CSNK1G3Q9Y6M4 447 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NEDD4P46934 1319 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 UMODL1Q5DID0 1318 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 PASKQ96RG2 1323 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 MUC5ACP98088 5654 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RUSC2Q8N2Y8 1516 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ARID1AO14497 2285 aa0.33□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms