RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 MKL2Q9ULH7 1088 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 CPAMD8Q8IZJ3 1885 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 HIVEP1P15822 2718 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 LOC102723996A0A087X1L8 192 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 A0A0A6YYC8 382 aaPredicted RBP18.4■□□□□ 0.54
CLN3-262ENST00000637699 A0A0U1RQJ8 604 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 A8MUI8 341 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 I3L1I5 382 aaPredicted RBP18.4■□□□□ 0.54
CLN3-262ENST00000637699 FTCDO95954 541 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 APRTP07741 180 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 ICAM2P13598 275 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 ETS1P14921 441 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 RPA3P35244 121 aaPredicted RBP18.4■□□□□ 0.54
CLN3-262ENST00000637699 CASP6P55212 293 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 XKRXQ6PP77 449 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 OTUD6BQ8N6M0 293 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 ACRBPQ8NEB7 543 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 FAM136AQ96C01 138 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 PANX2Q96RD6 677 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 TRIM8Q9BZR9 551 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 TGIF2Q9GZN2 237 aa18.4■□□□□ 0.54
CLN3-262ENST00000637699 IGKV1-8A0A0C4DH67 115 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 MIF4GDA9UHW6 222 aaKnown RBP18.39■□□□□ 0.53
CLN3-262ENST00000637699 FOXS1O43638 330 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 LIASO43766 372 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 SLC19A2O60779 497 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 ESRRAP11474 423 aaPredicted RBP18.39■□□□□ 0.53
CLN3-262ENST00000637699 EFNA3P52797 238 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 SESN2P58004 480 aaPredicted RBP18.39■□□□□ 0.53
CLN3-262ENST00000637699 AP2B1P63010 937 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 CRADDP78560 199 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 ADORA2A-AS1P86434 159 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 MAT1AQ00266 395 aaKnown RBP18.39■□□□□ 0.53
CLN3-262ENST00000637699 OASLQ15646 514 aaKnown RBP18.39■□□□□ 0.53
CLN3-262ENST00000637699 C3AR1Q16581 482 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 LONRF1Q17RB8 773 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 PCID2Q5JVF3 399 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 CTSL3PQ5NE16 218 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 TMEM205Q6UW68 189 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 PAQR7Q86WK9 346 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 LRRC6Q86X45 466 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 ZC3H7AQ8IWR0 971 aaKnown RBP18.39■□□□□ 0.53
CLN3-262ENST00000637699 OR9A1PQ8NGU1 263 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 SMPDL3AQ92484 453 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 RERGQ96A58 199 aaPredicted RBP18.39■□□□□ 0.53
CLN3-262ENST00000637699 IMMP1LQ96LU5 166 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 TUBB6Q9BUF5 446 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 DRC3Q9H069 523 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 TEKT2Q9UIF3 430 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 TINAGQ9UJW2 476 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 ZNF148Q9UQR1 794 aa18.39■□□□□ 0.53
CLN3-262ENST00000637699 SETD2Q9BYW2 2564 aaPredicted RBP18.39■□□□□ 0.53
CLN3-262ENST00000637699 IGHV3-20A0A0C4DH32 117 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 PHF2O75151 1096 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 NIPSNAP2O75323 286 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 MATN4O95460 622 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 C8orf89P0DMQ9 161 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 RPS3P23396 243 aaKnown RBP eCLIP18.38■□□□□ 0.534e-6■■□□□ 12.9
CLN3-262ENST00000637699 FMO4P31512 558 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 ANKRD20A4Q4UJ75 823 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 ZNF766Q5HY98 468 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.38■□□□□ 0.53
CLN3-262ENST00000637699 GARNL3Q5VVW2 1013 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 RAD9BQ6WBX8 426 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 KIAA1328Q86T90 577 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 SYCE1Q8N0S2 351 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 ZNF295-AS1Q8N0V1 137 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 METTL21AQ8WXB1 218 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 OR2A5Q96R48 311 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 ABCF3Q9NUQ8 709 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 TAC3Q9UHF0 121 aa18.38■□□□□ 0.53
CLN3-262ENST00000637699 HEATR5BQ9P2D3 2071 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 ARHGEF33A8MVX0 844 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 FAM227AF5H4B4 570 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 SEC24DO94855 1032 aaPredicted RBP18.37■□□□□ 0.53
CLN3-262ENST00000637699 NMBRP28336 390 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 ST13P50502 369 aaKnown RBP18.37■□□□□ 0.53
CLN3-262ENST00000637699 SNX1Q13596 522 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 FCRLBQ6BAA4 426 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 MPP5Q8N3R9 675 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 ARHGEF39Q8N4T4 335 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 C1orf54Q8WWF1 131 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 BIRC8Q96P09 236 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 TREX1Q9NSU2 369 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 PCYOX1Q9UHG3 505 aa18.37■□□□□ 0.53
CLN3-262ENST00000637699 C19orf84I3L1E1 186 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 P2RX6O15547 441 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 STATHP02808 62 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 ERGP11308 486 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 PKMP14618 531 aaKnown RBP18.36■□□□□ 0.53
CLN3-262ENST00000637699 SMSP52788 366 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 SNRPNP63162 240 aaKnown RBP18.36■□□□□ 0.53
CLN3-262ENST00000637699 PRDX1Q06830 199 aaKnown RBP18.36■□□□□ 0.53
CLN3-262ENST00000637699 CDSNQ15517 529 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 BTBD16Q32M84 506 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 ACSBG2Q5FVE4 666 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 MFSD4BQ5TF39 518 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 ICE2Q659A1 982 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 ZNF425Q6IV72 752 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 LANCL3Q6ZV70 420 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms