RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 IRAK4Q9NWZ3 460 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 RNF112Q9ULX5 631 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 IQANK1A0A1B0GTG1 560 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 PRICKLE3O43900 615 aaPredicted RBP17.09■□□□□ 0.33
CLN3-247ENST00000636351 ANXA5P08758 320 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 GCAP28676 217 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 DLSTP36957 453 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 SLC26A3P40879 764 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 IL11RAQ14626 422 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 OR4D1Q15615 310 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 ZIC1Q15915 447 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 FIGLAQ6QHK4 219 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 ADGRD1Q6QNK2 874 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 C6orf15Q6UXA7 325 aaPredicted RBP17.09■□□□□ 0.33
CLN3-247ENST00000636351 CDHR3Q6ZTQ4 885 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 ADCK2Q7Z695 626 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 GALNT6Q8NCL4 622 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 OR2A1Q8NGT9 310 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 CAVIN3Q969G5 261 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 PTERQ96BW5 349 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 NXNL1Q96CM4 212 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 MTBPQ96DY7 904 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 UBXN10Q96LJ8 280 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 TSNARE1Q96NA8 513 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 IGSF5Q9NSI5 407 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 FETUBQ9UGM5 382 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 TBK1Q9UHD2 729 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 CROTQ9UKG9 612 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 TP53TG5Q9Y2B4 290 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 KCNMB2Q9Y691 235 aa17.09■□□□□ 0.33
CLN3-247ENST00000636351 SPENQ96T58 3664 aaKnown RBP17.09■□□□□ 0.33
CLN3-247ENST00000636351 SUPT3HB4E1H0 165 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 SUPT3HO75486 399 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 TUBBP07437 444 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 NR1D1P20393 614 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 CCND1P24385 295 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 GRIA3P42263 894 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 SLCO1A2P46721 670 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 GLRBP48167 497 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 CDKL1Q00532 357 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 IFFO1Q0D2I5 559 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 DLG1Q12959 904 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 ICE2Q659A1 982 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 CAPN13Q6MZZ7 669 aaPredicted RBP17.08■□□□□ 0.32
CLN3-247ENST00000636351 CENPLQ8N0S6 344 aaPredicted RBP17.08■□□□□ 0.32
CLN3-247ENST00000636351 KIAA1191Q96A73 305 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 DPH7Q9BTV6 452 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 PCBD2Q9H0N5 130 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 FAM60AQ9NP50 221 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 SLC6A20Q9NP91 592 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 WWOXQ9NZC7 414 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 CD274Q9NZQ7 290 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 PLAAQ9Y263 795 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 PCDHB3Q9Y5E6 796 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 DOPEY2Q9Y3R5 2298 aa17.08■□□□□ 0.32
CLN3-247ENST00000636351 K7EM74 188 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 KIAA0754O94854 1291 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 FGF5P12034 268 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 ABATP80404 500 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 ERV3-1Q14264 604 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 TGFBIQ15582 683 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 TMEM126BQ8IUX1 230 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 LRRC56Q8IYG6 542 aaPredicted RBP17.07■□□□□ 0.32
CLN3-247ENST00000636351 OR8K5Q8NH50 307 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 STAG3L4Q8TBR4 150 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 ISL2Q96A47 359 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 PYCR2Q96C36 320 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 SCYL1Q96KG9 808 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 SLC7A5P2Q9GIP4 190 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 PPCSQ9HAB8 311 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 PCMTD2Q9NV79 361 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 RAB21Q9UL25 225 aa17.07■□□□□ 0.32
CLN3-247ENST00000636351 CLEC18AA5D8T8 446 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 KERAO60938 352 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 KATNA1O75449 491 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 KLHL2O95198 593 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 FURINP09958 794 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 MAGEA12P43365 314 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 HNMTP50135 292 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 ITGA1P56199 1179 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 YBX1P67809 324 aaKnown RBP17.06■□□□□ 0.32
CLN3-247ENST00000636351 PRDX1Q06830 199 aaKnown RBP17.06■□□□□ 0.32
CLN3-247ENST00000636351 KLRB1Q12918 225 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.06■□□□□ 0.32
CLN3-247ENST00000636351 ZC3H12BQ5HYM0 836 aaKnown RBP17.06■□□□□ 0.32
CLN3-247ENST00000636351 FCRL6Q6DN72 434 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 CLEC18BQ6UXF7 455 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 BPHLQ86WA6 291 aaPredicted RBP17.06■□□□□ 0.32
CLN3-247ENST00000636351 C17orf64Q86WR6 236 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 GPR135Q8IZ08 494 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 CLEC18CQ8NCF0 446 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 OR56A3Q8NH54 315 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 EPS8L3Q8TE67 593 aaKnown RBP17.06■□□□□ 0.32
CLN3-247ENST00000636351 ZUFSPQ96AP4 578 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 ZNF501Q96CX3 271 aaPredicted RBP17.06■□□□□ 0.32
CLN3-247ENST00000636351 HAUS8Q9BT25 410 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 SGPP1Q9BX95 441 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 CHRNA10Q9GZZ6 450 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 RRAGDQ9NQL2 400 aaPredicted RBP17.06■□□□□ 0.32
CLN3-247ENST00000636351 NUDT4Q9NZJ9 180 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms